View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10159_high_16 (Length: 250)

Name: NF10159_high_16
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10159_high_16
NF10159_high_16
[»] chr2 (13 HSPs)
chr2 (1-244)||(39215683-39215926)
chr2 (39-206)||(39192266-39192436)
chr2 (39-206)||(39197946-39198116)
chr2 (39-141)||(39222932-39223037)
chr2 (72-214)||(39370254-39370399)
chr2 (39-215)||(39161931-39162110)
chr2 (39-215)||(39207084-39207263)
chr2 (39-207)||(39388918-39389091)
chr2 (68-205)||(39381275-39381412)
chr2 (68-113)||(39421688-39421733)
chr2 (68-105)||(39468448-39468485)
chr2 (147-200)||(39223101-39223154)
chr2 (61-105)||(39459387-39459431)
[»] chr5 (2 HSPs)
chr5 (68-214)||(33561135-33561286)
chr5 (73-113)||(17059602-17059642)
[»] chr7 (1 HSPs)
chr7 (69-165)||(19807963-19808059)
[»] chr6 (1 HSPs)
chr6 (68-105)||(16113441-16113478)
[»] chr8 (1 HSPs)
chr8 (84-199)||(45342187-45342305)


Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 39215683 - 39215926
Alignment:
Q  1 aagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggtaaatgttcttattcatctagtttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215683 aagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggtaaatgttcttattcatctagtttat 39215782  T
Q  101 tgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215783 tgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 39215882  T
Q  201 ttatgtctttgtcatattgaaattttgtctagttttcatctcac 244  Q
    |||||||||||||||||||||||||| |||||||||||| ||||    
T  39215883 ttatgtctttgtcatattgaaattttttctagttttcatatcac 39215926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 39192436 - 39192266
Alignment:
Q  39 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 135  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39192436 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39192337  T
Q  136 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 206  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39192336 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39192266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 39198116 - 39197946
Alignment:
Q  39 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 135  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39198116 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39198017  T
Q  136 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 206  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39198016 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39197946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 39222932 - 39223037
Alignment:
Q  39 gtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 135  Q
    |||||||||||||||||||||   ||||| | |||||||||||||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||||||    
T  39222932 gtcaaggaaaaaatatattgatggagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctcttaatga 39223031  T
Q  136 tgatga 141  Q
    ||||||    
T  39223032 tgatga 39223037  T

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Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 214
Target Start/End: Original strand, 39370254 - 39370399
Alignment:
Q  72 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctctta---atgatgatgacaatttttataacccgatctacatagt 168  Q
    ||||||||||||||||||||||||||||||||   | ||||| || ||  ||||| ||||   |||||||||| | |||||||||||||||||| |||||    
T  39370254 gggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataacccgatctatatagt 39370353  T
Q  169 tgtttaaaaatatttttaatcatgttaatgttttatgtctttgtca 214  Q
    | | |||||| ||| ||||||||||||||||| |||||||| ||||    
T  39370354 tctataaaaacattcttaatcatgttaatgttgtatgtcttggtca 39370399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 215
Target Start/End: Original strand, 39161931 - 39162110
Alignment:
Q  39 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 135  Q
    ||||||||||||||||||||| ||   || | |||| ||||||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| |||||||    
T  39161931 gtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatga 39162030  T
Q  136 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgtcat 215  Q
    |||||| | |||||  | || ||||||| || || |||||| |  |||||| ||||||||||||| |||||||| |||||    
T  39162031 tgatgatattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtcttagtcat 39162110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 215
Target Start/End: Complemental strand, 39207263 - 39207084
Alignment:
Q  39 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 135  Q
    ||||||||||||||||||||| ||   || | |||| ||||||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| |||||||    
T  39207263 gtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatga 39207164  T
Q  136 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgtcat 215  Q
    |||||| | |||||  | || ||||||| || || |||||| |  |||||| ||||||||||||| |||||||| |||||    
T  39207163 tgatgatattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtcttagtcat 39207084  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 207
Target Start/End: Complemental strand, 39389091 - 39388918
Alignment:
Q  39 gtcaaggaaaaaatatattgaag---aaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 135  Q
    |||||||||||||||| |||| |   ||| | |||| |||||||||||||||||||| |||||||||||||| |||   |||||| ||||||||||||||    
T  39389091 gtcaaggaaaaaatattttgatggggaaaaagaatccggtaaatgttcttattcatccagtttattgaaagaatttttttacaactgttcctcttaatga 39388992  T
Q  136 tgatgaca--atttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtc 207  Q
    |||||| |   |||||||| |  ||||||| || ||   || |||  |||||||||||||||||||| ||||||    
T  39388991 tgatgatattttttttatagcttgatctacttaattccatagaaacgtttttaatcatgttaatgttgtatgtc 39388918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 39381412 - 39381275
Alignment:
Q  68 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatag 167  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||| | ||   ||| || ||||||||| ||| | ||||  ||||  ||||||||||     
T  39381412 aatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatacttttattaacttgatctacataa 39381313  T
Q  168 ttgtttaaaaatatttttaatcatgttaatgttttatg 205  Q
    ||  |||||||||||||||||| |||||||||| ||||    
T  39381312 ttcattaaaaatatttttaatcgtgttaatgttgtatg 39381275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 39421733 - 39421688
Alignment:
Q  68 aatcgggtaaatgttcttattcatctagtttattgaaagagtttca 113  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  39421733 aatctggtaaatgttcttattcatctaatttattgaaagagtttca 39421688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 39468448 - 39468485
Alignment:
Q  68 aatcgggtaaatgttcttattcatctagtttattgaaa 105  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39468448 aatctggtaaatgttcttattcatctagtttattgaaa 39468485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 39223101 - 39223154
Alignment:
Q  147 tttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 200  Q
    |||| |||| ||||||| || || ||||| ||||||||||||||||||||||||    
T  39223101 tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgtt 39223154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 39459387 - 39459431
Alignment:
Q  61 gaaacacaatcgggtaaatgttcttattcatctagtttattgaaa 105  Q
    |||||| |||||||||| ||||||||||||| ||| |||||||||    
T  39459387 gaaacagaatcgggtaagtgttcttattcatttagcttattgaaa 39459431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 33561135 - 33561286
Alignment:
Q  68 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaattt----ttataacccgatctac 163  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| | || ||  |||||||| | |||||||||  ||||    ||||| || |||||||    
T  33561135 aatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttgttatatcctgatctac 33561234  T
Q  164 atagttgtttaaaaatatttttaatcatgttaatgttt-tatgtctttgtca 214  Q
     || |  |||||| | |||||||||||||||||||||| |||||||| ||||    
T  33561235 ttaatcctttaaacacatttttaatcatgttaatgtttgtatgtcttggtca 33561286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 17059602 - 17059642
Alignment:
Q  73 ggtaaatgttcttattcatctagtttattgaaagagtttca 113  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  17059602 ggtaaatgttgttattcatctagtttattaaaagaatttca 17059642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 19807963 - 19808059
Alignment:
Q  69 atcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacat 165  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| | || | ||| || || |||||| ||| | |||| |||||| |||||||||    
T  19807963 atcgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaataacctgatctacat 19808059  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 16113441 - 16113478
Alignment:
Q  68 aatcgggtaaatgttcttattcatctagtttattgaaa 105  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  16113441 aatcgggtaagtgttctcattcatctagtttattgaaa 16113478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 45342187 - 45342305
Alignment:
Q  84 ttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaa---ata 180  Q
    |||||||||||||||||||||||| ||||| | ||||  || || ||  ||||| ||| | |||| |||||| |||||||||| |  |||||||   |||    
T  45342187 ttattcatctagtttattgaaagaatttcatttcaactatttcttttgttgatgttgatatttttaataacctgatctacatattcttttaaaaaatata 45342286  T
Q  181 tttttaatcatgttaatgt 199  Q
    | |||||| ||||||||||    
T  45342287 tgtttaatgatgttaatgt 45342305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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