View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10159_high_21 (Length: 241)

Name: NF10159_high_21
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10159_high_21
NF10159_high_21
[»] chr4 (5 HSPs)
chr4 (14-224)||(40392041-40392248)
chr4 (1-63)||(40380710-40380772)
chr4 (15-88)||(41052188-41052261)
chr4 (15-104)||(54592821-54592909)
chr4 (160-193)||(41052100-41052133)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 40392041 - 40392248
Alignment:
Q  14 cttcttttgttaagtcttctggttaaacatttctaaagtgagaacttacatagaaccataagaaacttcaatgtggttgttgattaacatgaactaaggg 113  Q
    |||||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40392041 cttcttttgttaagtct---ggttaaacatttctgaagtgagaacttacatagaaccataagaaacttcaatgtggttgttgattaacatgaattaaggg 40392137  T
Q  114 ataatgatgcttactagttctgcttattaagcacaaaagatattttaatttatttgcatctacattgttgtctttgttcaatggcagcgtctaatgtcga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40392138 ataatgatgcttactagttctgcttattaagcacaaaagatattttaatttatttgcatctacattgttgtctttgttcaatggcagagtctaatgtcga 40392237  T
Q  214 tctcgatcact 224  Q
    |||||||||||    
T  40392238 tctcgatcact 40392248  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 40380710 - 40380772
Alignment:
Q  1 atttgaatactgtcttcttttgttaagtcttctggttaaacatttctaaagtgagaacttaca 63  Q
    ||||| || |||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  40380710 atttggatgctgtcttcttttgttaagtcttctggttgaacatttttaaagtgagaacttaca 40380772  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 41052261 - 41052188
Alignment:
Q  15 ttcttttgttaagtcttctggttaaacatttctaaagtgagaacttacatagaaccataagaaacttcaatgtg 88  Q
    |||||| |||||||||||||||| ||| ||||||||||||||| ||| | |||||| |||||||| ||||||||    
T  41052261 ttctttggttaagtcttctggttgaacttttctaaagtgagaaattaaacagaaccttaagaaacatcaatgtg 41052188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 54592821 - 54592909
Alignment:
Q  15 ttcttttgttaagtcttctggttaaacatttctaaagtgagaacttacatagaaccataagaaacttcaatgtggttgttgattaacatg 104  Q
    |||||| ||||||| ||| |||  |||||||||||| |||||||||| | |||||| ||||||||||||||||||| |||| ||||||||    
T  54592821 ttctttggttaagttttcaggtggaacatttctaaactgagaacttaaa-agaaccttaagaaacttcaatgtggtagttgcttaacatg 54592909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 41052133 - 41052100
Alignment:
Q  160 aatttatttgcatctacattgttgtctttgttca 193  Q
    ||||||||||||| ||||||||||||||||||||    
T  41052133 aatttatttgcatatacattgttgtctttgttca 41052100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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