View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10159_high_23 (Length: 238)

Name: NF10159_high_23
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10159_high_23
NF10159_high_23
[»] chr2 (12 HSPs)
chr2 (3-204)||(39215357-39215558)
chr2 (29-172)||(39414883-39415026)
chr2 (24-123)||(39459058-39459157)
chr2 (32-202)||(39473555-39473725)
chr2 (17-171)||(39137598-39137752)
chr2 (69-189)||(39421973-39422093)
chr2 (87-172)||(39415025-39415110)
chr2 (21-123)||(39369914-39370016)
chr2 (117-171)||(39487723-39487777)
chr2 (17-84)||(39152429-39152496)
chr2 (56-166)||(39381639-39381749)
chr2 (104-146)||(44614681-44614723)
[»] chr7 (1 HSPs)
chr7 (17-181)||(19807538-19807702)
[»] chr8 (1 HSPs)
chr8 (113-162)||(44951213-44951262)
[»] chr5 (1 HSPs)
chr5 (74-151)||(33560771-33560848)
[»] scaffold0250 (1 HSPs)
scaffold0250 (113-170)||(4265-4322)
[»] chr4 (1 HSPs)
chr4 (89-133)||(33151510-33151554)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 3 - 204
Target Start/End: Complemental strand, 39215558 - 39215357
Alignment:
Q  3 tttgattcaaagctctcaacttggctttcaaattgcttcttttttaaactgagctccttaacccggcctttgaattcctcctcatttgattcaagctcct 102  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215558 tttgattcaaagctctcaacttgtctttcaaattgcttcttttttaaactgagctccttaacccggcctttgaattcctcctcatttgattcaagctcct 39215459  T
Q  103 ccacttgacctttaaattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttctttggtttcgagattcttcaattgtctctcgaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215458 ccacttgacctttaaattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttctttggtttcgagattcttcaattgtctctcgaa 39215359  T
Q  203 ca 204  Q
    ||    
T  39215358 ca 39215357  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 39414883 - 39415026
Alignment:
Q  29 ttcaaattgcttcttttttaaactgagctccttaacccggcctttgaattcctcctcatttgattcaagctcctccacttgacctttaaattcctcctgt 128  Q
    |||||||||||||| |||| |  |||| ||||||||  | |||||||| |||||||| |||||||||| ||||| |||||||||||| |||||| ||| |    
T  39414883 ttcaaattgcttctcttttgatttgagttccttaacttgacctttgaactcctcctcctttgattcaaactccttcacttgacctttgaattccccctct 39414982  T
Q  129 tttgactggaactccttcttttgttcttcgaattgcttttcttt 172  Q
    ||||| |||||||||||| ||||||||  ||||| |||||||||    
T  39414983 tttgagtggaactccttcatttgttctctgaatttcttttcttt 39415026  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 39459157 - 39459058
Alignment:
Q  24 tggctttcaaattgcttcttttttaaactgagctccttaacccggcctttgaattcctcctcatttgattcaagctcctccacttgacctttaaattcct 123  Q
    |||||||||||||||||||||||| || |||||| ||||||| | |||||||||||||||| ||||||||||| ||||| | ||||||||||||| ||||    
T  39459157 tggctttcaaattgcttcttttttgaattgagctgcttaacctgacctttgaattcctccttatttgattcaaactccttcccttgacctttaaactcct 39459058  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 39473555 - 39473725
Alignment:
Q  32 aaattgcttcttttttaaactgagctccttaacccggcctttgaattcctcctcatttgattcaagctcctccacttgacctttaaattcctcctgtttt 131  Q
    |||||||||||||||| |  | |||||||||||||| ||||||||||||||||  || | || || ||||| ||||||||  ||||||||||||| ||||    
T  39473555 aaattgcttctttttttatttaagctccttaacccgacctttgaattcctccttcttcgttttaaactccttcacttgactgttaaattcctcctctttt 39473654  T
Q  132 gactggaactccttcttttgttcttcgaattgcttttctttggtttcgagattcttcaattgtctctcgaa 202  Q
    |||||||||||||||  |||| | |  |||| ||||||||| | |||||| | ||||| ||| ||||||||    
T  39473655 gactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaa 39473725  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 39137752 - 39137598
Alignment:
Q  17 ctcaacttggctttcaaattgcttcttttttaaactgagctccttaacccggcctttgaattcctcctcatttgattcaagctcctccacttgaccttta 116  Q
    |||||||||| |||| ||||||||||||||| |  |||||||||||||  |  ||| ||| ||||| || ||||||||||  |||| ||| ||  ||||     
T  39137752 ctcaacttggttttcgaattgcttcttttttgatttgagctccttaacttgatcttcgaactcctcatcctttgattcaaaatccttcacgtgtactttg 39137653  T
Q  117 aattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttctt 171  Q
    |||||||| | ||||||||||||||||||| ||||||||||  ||||||||||||    
T  39137652 aattcctcttcttttgactggaactccttcatttgttcttcatattgcttttctt 39137598  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 189
Target Start/End: Original strand, 39421973 - 39422093
Alignment:
Q  69 cctttgaattcctcctcatttgattcaagctcctccacttgacctttaaattcctcctgttttgactggaactccttcttttgttcttcgaattgctttt 168  Q
    |||||||||| |||||| ||||||| || ||||| || || ||| ||||||||||||| ||||||| ||||||||||| ||||| | ||||||| |||||    
T  39421973 cctttgaattgctcctcctttgatttaaactccttcaatttaccgttaaattcctcctcttttgacaggaactccttcatttgtccatcgaatttctttt 39422072  T
Q  169 ctttggtttcgagattcttca 189  Q
    || | | |||||||| |||||    
T  39422073 ctattgattcgagatccttca 39422093  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 39415025 - 39415110
Alignment:
Q  87 tttgattcaagctcctccacttgacctttaaattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttcttt 172  Q
    |||||||||| ||||| |||||| ||||| | |||||||| ||||||||||||||| ||| || |||||| |||||| ||||||||    
T  39415025 tttgattcaaactccttcacttgtcctttgagttcctcctcttttgactggaactctttcattcgttctttgaattgattttcttt 39415110  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 39370016 - 39369914
Alignment:
Q  21 acttggctttcaaattgcttcttttttaaactgagctccttaacccggcctttgaattcctcctcatttgattcaagctcctccacttgacctttaaatt 120  Q
    |||||| |||||||||||||| ||| | |  ||| ||||||||| || ||||  ||||||||||| |||||||||||| ||| |||| |||||||||| |    
T  39370016 acttgggtttcaaattgcttcctttctgacttgaactccttaactcgaccttcaaattcctcctcctttgattcaagcaccttcactcgacctttaaact 39369917  T
Q  121 cct 123  Q
    |||    
T  39369916 cct 39369914  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 39487723 - 39487777
Alignment:
Q  117 aattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttctt 171  Q
    |||||||||| ||||||||||||||||||| ||||||||||   |||||||||||    
T  39487723 aattcctcctcttttgactggaactccttcatttgttcttcatgttgcttttctt 39487777  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 39152496 - 39152429
Alignment:
Q  17 ctcaacttggctttcaaattgcttcttttttaaactgagctccttaacccggcctttgaattcctcct 84  Q
    |||||| ||| ||||||||| |||||||||| |  | |||||||||||| | ||||||||||||||||    
T  39152496 ctcaacctggatttcaaatttcttcttttttgatttaagctccttaacctgacctttgaattcctcct 39152429  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 39381639 - 39381749
Alignment:
Q  56 ctccttaacccggcctttgaattcctcctcatttgattcaagctcctccacttgacctttaaattcctcctgttttgactggaactccttcttttgttct 155  Q
    |||||||||  | ||||||| ||||||||  ||||||| ||  |||| |||||  |||| ||||||||||| |||| | || ||||||||| ||||| |     
T  39381639 ctccttaacttgacctttgagttcctccttctttgatttaatttccttcactttgccttcaaattcctcctcttttaattgaaactccttcatttgtccc 39381738  T
Q  156 tcgaattgctt 166  Q
    |||||||||||    
T  39381739 tcgaattgctt 39381749  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 44614723 - 44614681
Alignment:
Q  104 cacttgacctttaaattcctcctgttttgactggaactccttc 146  Q
    |||| |||||||||||||||||| || ||||||||||||||||    
T  44614723 cactcgacctttaaattcctcctcttctgactggaactccttc 44614681  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 19807702 - 19807538
Alignment:
Q  17 ctcaacttggctttcaaattgcttcttttttaaactgagctccttaacccggcctttgaattcctcctcatttgattcaagctcctccacttgaccttta 116  Q
    |||||||||| |||| ||||||||||||||| |  ||| ||||||||| || |||| |||  |||| || ||||||||||  |||| ||| ||  ||||     
T  19807702 ctcaacttggttttcgaattgcttctttttttatttgaactccttaactcgaccttcgaacccctcatcctttgattcaaaatccttcacgtgtgctttg 19807603  T
Q  117 aattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttctttggtttcgag 181  Q
    |||||||| | ||||||||||||||||||| ||||||||||  ||||||||||||  ||||||||    
T  19807602 aattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcgag 19807538  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 44951213 - 44951262
Alignment:
Q  113 tttaaattcctcctgttttgactggaactccttcttttgttcttcgaatt 162  Q
    |||||||||||||| ||||||||| |||||||||| |||||||| |||||    
T  44951213 tttaaattcctcctcttttgactgaaactccttctcttgttctttgaatt 44951262  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 33560848 - 33560771
Alignment:
Q  74 gaattcctcctcatttgattcaagctcctccacttgacctttaaattcctcctgttttgactggaactccttcttttg 151  Q
    |||||||||||| ||||||| || ||||| |||||| ||||| |||| ||||| |||||||| || ||||||| ||||    
T  33560848 gaattcctcctcttttgattgaaactccttcacttgtcctttgaatttctcctcttttgactcgagctccttcatttg 33560771  T

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Target: scaffold0250 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 4322 - 4265
Alignment:
Q  113 tttaaattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttct 170  Q
    |||||||||||||| ||||||||| |||||||||| |||| ||| ||||  |||||||    
T  4322 tttaaattcctcctcttttgactgaaactccttctcttgtcctttgaatatcttttct 4265  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 33151554 - 33151510
Alignment:
Q  89 tgattcaagctcctccacttgacctttaaattcctcctgttttga 133  Q
    ||||||||| |||| ||||||||||||||||||||| | ||||||    
T  33151554 tgattcaagatccttcacttgacctttaaattcctcttcttttga 33151510  T

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