View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10159_high_28 (Length: 206)
Name: NF10159_high_28
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_high_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 22011616 - 22011448
Alignment:
| Q |
20 |
gtacaattattttattatttattatgttaaacatgaaacggtgcgtttcacttaatctgtcctaattcaaaatttgggtattcattcctagtagttgatt |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22011616 |
gtacaattattttattatatattatgttaaacatgaaacggtgcgtttcacttaatctgtcctaattcaaaatttgggtattcattcctagtagttgatt |
22011517 |
T |
|
| Q |
120 |
tggagactctattaaaatggcagcaactcaatacaattcacaactattggtggtaaatattggtatatg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22011516 |
tggagactctattaaaatggcagcaactcaatacaattcacaactattggtggtaaatattggtatatg |
22011448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 44313543 - 44313375
Alignment:
| Q |
20 |
gtacaattattttattatttattatgttaaacatgaaacggtgcgtttcacttaatctgtcctaattcaaaatttgggtattcattcctagtagttgatt |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44313543 |
gtacaattattttattatatattatgttaaacatgaaacggtgcgtttcacttaatctgtcctaattcaaaatttgggtattcattcctagtagttgatt |
44313444 |
T |
|
| Q |
120 |
tggagactctattaaaatggcagcaactcaatacaattcacaactattggtggtaaatattggtatatg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44313443 |
tggagactctattaaaatggcagcaactcaatacaattcacaactattggtggtaaatattggtatatg |
44313375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University