View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_high_4 (Length: 546)
Name: NF10159_high_4
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF10159_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 12 - 536
Target Start/End: Complemental strand, 4284852 - 4284328
Alignment:
Q |
12 |
tcatcacttagatcgcttggctctagggccggtgttggcctggtaagtactcgtattgtacatatttctttttagttgaactataaagaaagatgtgatc |
111 |
Q |
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|||| |||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| || |
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T |
4284852 |
tcataacttagatagcttggccttagggcaagtgctggcctggtaagtactcgtattgtacatatttctttttggttggactataaagaaagacgtggtc |
4284753 |
T |
 |
Q |
112 |
tttacgtattcgccattgacaaccatcctcttctttcttagaatcattgcaaaaatcaccaaaggctataaactcttttctccaactagattttttcaaa |
211 |
Q |
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T |
4284752 |
tttacgtatttgccattgacaaccatccacttctttcttacaatcattgcaaaaatcaccaaaggctataaactcttttctccaactagattttttcaaa |
4284653 |
T |
 |
Q |
212 |
gtgacaatgcaacgatatgttcgttgtaccccattatcacaaaagccaaaacaacccgttggatttggccatgtatgttctgccctagcatcagcataac |
311 |
Q |
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T |
4284652 |
gtgacaacgcaacgatatgttcgttgtaccccattatcacaaaagccaaaacaacccgttggatttggccatgtatgttctgccccagcatcagcataac |
4284553 |
T |
 |
Q |
312 |
atataattgtcatcttannnnnnnncatatcatatgttggatcatctttagataggtggttttctaaggtaacagtataatatggtgacccaaagcaata |
411 |
Q |
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T |
4284552 |
atgtaattgtcatcttattttttttcatatcatatgttggatcatctttagataggtggttttcaaaggtaacagtataatatggtgacccaaagcaata |
4284453 |
T |
 |
Q |
412 |
caaaccattcggccacaaactgcaagttgcatttgttaccttagaaaataagattagggttaaaataatttgcactacaacatctgtgaaatttttggta |
511 |
Q |
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T |
4284452 |
caaaccattcggccacaaactgcaagttgcatttgttaccttagaaaataagattagggttaaaataatttgcactacaacatctgtgaaatttttggta |
4284353 |
T |
 |
Q |
512 |
atggtgttgttattcaatctttctt |
536 |
Q |
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T |
4284352 |
atggtgttgttattcaatctttctt |
4284328 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 439 - 536
Target Start/End: Complemental strand, 4278032 - 4277935
Alignment:
Q |
439 |
tgcatttgttaccttagaaaataagattagggttaaaataatttgcactacaacatctgtgaaatttttggtaatggtgttgttattcaatctttctt |
536 |
Q |
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T |
4278032 |
tgcatttgatatcttagaaaatagtattactgtcaaaataattttcactacaacatttgtgaaatttctgttaatgactatgttattcaatctttctt |
4277935 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 4289892 - 4289843
Alignment:
Q |
68 |
tgtacatatttctttttagttgaactataaagaaagatgtgatctttacg |
117 |
Q |
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T |
4289892 |
tgtacatatttctttttaattggactataaagaaagacgtgatctttacg |
4289843 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 536
Target Start/End: Complemental strand, 4289575 - 4289474
Alignment:
Q |
439 |
tgcatttgttaccttagaaaataagattagggttaaaataatttgcactacaacatctgtgaaatttttg----gtaatggtgttgttattcaatctttc |
534 |
Q |
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T |
4289575 |
tgcatttgttatcttaggaaataatattagtgtggaaataatttgtactacaacatttgtgaattttttgttaattaatggtgtttttattcgatctttc |
4289476 |
T |
 |
Q |
535 |
tt |
536 |
Q |
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|
|| |
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|
T |
4289475 |
tt |
4289474 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 4289671 - 4289621
Alignment:
Q |
340 |
atcatatgttggatcatctttagataggtggttttctaaggtaacagtata |
390 |
Q |
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T |
4289671 |
atcatatgttgaataatctttagataggttgttttcaaaggaaacagtata |
4289621 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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