View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10159_high_4 (Length: 546)

Name: NF10159_high_4
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10159_high_4
NF10159_high_4
[»] chr8 (5 HSPs)
chr8 (12-536)||(4284328-4284852)
chr8 (439-536)||(4277935-4278032)
chr8 (68-117)||(4289843-4289892)
chr8 (439-536)||(4289474-4289575)
chr8 (340-390)||(4289621-4289671)


Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 12 - 536
Target Start/End: Complemental strand, 4284852 - 4284328
Alignment:
12 tcatcacttagatcgcttggctctagggccggtgttggcctggtaagtactcgtattgtacatatttctttttagttgaactataaagaaagatgtgatc 111  Q
    |||| |||||||| |||||||  ||||||  ||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| ||    
4284852 tcataacttagatagcttggccttagggcaagtgctggcctggtaagtactcgtattgtacatatttctttttggttggactataaagaaagacgtggtc 4284753  T
112 tttacgtattcgccattgacaaccatcctcttctttcttagaatcattgcaaaaatcaccaaaggctataaactcttttctccaactagattttttcaaa 211  Q
    |||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4284752 tttacgtatttgccattgacaaccatccacttctttcttacaatcattgcaaaaatcaccaaaggctataaactcttttctccaactagattttttcaaa 4284653  T
212 gtgacaatgcaacgatatgttcgttgtaccccattatcacaaaagccaaaacaacccgttggatttggccatgtatgttctgccctagcatcagcataac 311  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
4284652 gtgacaacgcaacgatatgttcgttgtaccccattatcacaaaagccaaaacaacccgttggatttggccatgtatgttctgccccagcatcagcataac 4284553  T
312 atataattgtcatcttannnnnnnncatatcatatgttggatcatctttagataggtggttttctaaggtaacagtataatatggtgacccaaagcaata 411  Q
    || ||||||||||||||        ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
4284552 atgtaattgtcatcttattttttttcatatcatatgttggatcatctttagataggtggttttcaaaggtaacagtataatatggtgacccaaagcaata 4284453  T
412 caaaccattcggccacaaactgcaagttgcatttgttaccttagaaaataagattagggttaaaataatttgcactacaacatctgtgaaatttttggta 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4284452 caaaccattcggccacaaactgcaagttgcatttgttaccttagaaaataagattagggttaaaataatttgcactacaacatctgtgaaatttttggta 4284353  T
512 atggtgttgttattcaatctttctt 536  Q
    |||||||||||||||||||||||||    
4284352 atggtgttgttattcaatctttctt 4284328  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 439 - 536
Target Start/End: Complemental strand, 4278032 - 4277935
Alignment:
439 tgcatttgttaccttagaaaataagattagggttaaaataatttgcactacaacatctgtgaaatttttggtaatggtgttgttattcaatctttctt 536  Q
    |||||||| || |||||||||||  ||||  || |||||||||| ||||||||||| |||||||||| || |||||    ||||||||||||||||||    
4278032 tgcatttgatatcttagaaaatagtattactgtcaaaataattttcactacaacatttgtgaaatttctgttaatgactatgttattcaatctttctt 4277935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 4289892 - 4289843
Alignment:
68 tgtacatatttctttttagttgaactataaagaaagatgtgatctttacg 117  Q
    |||||||||||||||||| ||| |||||||||||||| ||||||||||||    
4289892 tgtacatatttctttttaattggactataaagaaagacgtgatctttacg 4289843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 536
Target Start/End: Complemental strand, 4289575 - 4289474
Alignment:
439 tgcatttgttaccttagaaaataagattagggttaaaataatttgcactacaacatctgtgaaatttttg----gtaatggtgttgttattcaatctttc 534  Q
    ||||||||||| ||||| |||||| ||||| ||  |||||||||| |||||||||| |||||| ||||||     |||||||||| |||||| |||||||    
4289575 tgcatttgttatcttaggaaataatattagtgtggaaataatttgtactacaacatttgtgaattttttgttaattaatggtgtttttattcgatctttc 4289476  T
535 tt 536  Q
    ||    
4289475 tt 4289474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 4289671 - 4289621
Alignment:
340 atcatatgttggatcatctttagataggtggttttctaaggtaacagtata 390  Q
    ||||||||||| || |||||||||||||| |||||| |||| |||||||||    
4289671 atcatatgttgaataatctttagataggttgttttcaaaggaaacagtata 4289621  T

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