View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_high_5 (Length: 465)
Name: NF10159_high_5
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 447
Target Start/End: Original strand, 33028621 - 33029062
Alignment:
| Q |
16 |
caaattacttgaaagatattgttgtgatgcaaagaggggagatgtgatgttagttctgtttaataa---gtcatgtataccttttgtatcatgtatactt |
112 |
Q |
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| T |
33028621 |
caaattacttgaaagatattgttgtgatgcaaagaggggagatgtgatgttagttctgtttaataataagtcatgtataccttttgtatcatgtatactt |
33028720 |
T |
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| Q |
113 |
attaaactaaataataagtcatttaacggtttccattttatgtttcaacttctgcatttcccgtttgcactttatcctccaaatctgattgtataaggat |
212 |
Q |
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| T |
33028721 |
attaaactaaataataagtcatttaacggtttccattttatgtttcaacttctgcatttcccgtttgcactttatcctccaaatctgattgtataaggat |
33028820 |
T |
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| Q |
213 |
ac-------atcagttatgtttccattagcaaatgtctactataggaactacttcatttcttctgatggttttccaaactaaaccaacctccctttcctg |
305 |
Q |
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| T |
33028821 |
acatcatacatcagttatgtttccattagcaaatgtctactataggaactgcttcatttcttctgatggttttccaaagtaaaccaagctccctttcctg |
33028920 |
T |
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| Q |
306 |
ataagtattgttctaacagaagcatataatcaaaaagctgaaaaatggtttgaaaaatttgaagaacccaagtcacaattctgtccctttatttggtttc |
405 |
Q |
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| T |
33028921 |
ataagtattgttctaacagaagcatagaatcaaaaagctgaaaaatggtttgaaaaatttgaagaacccaagtcacaattctgtccctttatttggtttc |
33029020 |
T |
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| Q |
406 |
ctattctgatagaaggttgctttactcgatcaatccctctct |
447 |
Q |
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| T |
33029021 |
ctattctgatagaaggttgctttactcgatcaatccctctct |
33029062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 33040083 - 33040146
Alignment:
| Q |
16 |
caaattacttgaaagatattgttgtgatgcaaagaggggagatgtgatgttagttctgtttaat |
79 |
Q |
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| T |
33040083 |
caaactacttgaaagatattgttgtgatgcaaagaggggagatgtgatgttagtcctgtttaat |
33040146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 24127362 - 24127269
Alignment:
| Q |
142 |
tttccattttatgtttcaacttctgcatttcccgtttgcactttatcctccaaatctgattgtataaggatacatcagttatgtttccattagcaa |
237 |
Q |
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| T |
24127362 |
tttccatgatatgtttcaactgctgcatttccaatttgcactttatcctccaactccgatggtaca--gaaacatcatttatatttccattagcaa |
24127269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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