View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10159_high_8 (Length: 410)

Name: NF10159_high_8
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10159_high_8
NF10159_high_8
[»] chr7 (1 HSPs)
chr7 (17-387)||(10592571-10592942)
[»] chr8 (3 HSPs)
chr8 (18-102)||(32123091-32123175)
chr8 (133-282)||(32120462-32120613)
chr8 (115-143)||(31875163-31875191)
[»] chr2 (1 HSPs)
chr2 (113-160)||(815689-815736)
[»] chr5 (3 HSPs)
chr5 (113-160)||(27690415-27690462)
chr5 (93-161)||(29047888-29047956)
chr5 (115-160)||(16490115-16490160)
[»] chr4 (1 HSPs)
chr4 (122-166)||(50781584-50781628)
[»] chr1 (2 HSPs)
chr1 (113-157)||(35990014-35990058)
chr1 (113-160)||(28639932-28639979)
[»] chr3 (1 HSPs)
chr3 (92-161)||(29582322-29582391)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 10592571 - 10592942
Alignment:
Q  17 tgaattgcaatgaagatgaaggggtatgcaagactgtctaaaaccacaataccatcctacaatgtaacaaatggcaaaggaaacatctaaaatataccaa 116  Q
    |||||||||||||||||||| ||||||   |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10592571 tgaattgcaatgaagatgaaagggtataatagaccgtctaaaaccacaataccatcctagaatgtaacaaatggcaaaggaaacatctaaaatataccaa 10592670  T
Q  117 ccgaccaaaaatgcattaaacacatcataaaccgtctaaaccttgcttgttatgccaccattcatagccgaacacatttcagattttataatctgaactc 216  Q
    |||||||||||| |||||| |||||||||||| ||| |||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||||||    
T  10592671 ccgaccaaaaatacattaaccacatcataaactgtccaaaccttgcttgttatgccaccgtccacagccggacacatttcagattttataatctgaactc 10592770  T
Q  217 atgcccaatattggttcatatgatataatttgaaatgtgcgcagattgcattaaaagttatgatttcatggtttggcatgttttttattatatacttcga 316  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||  || ||||||    
T  10592771 atgtccaatattggttc-tatgatataatttgaaatgtgcgcagattgcattaaaagttatgatttcatagtttgacatattttttatttgattcttcga 10592869  T
Q  317 a-cttcttcttcagtacacaaaatagaaaa-atgtaatttgaagaannnnnnncccaaactaaaaagattgaa 387  Q
    | |||||||||||| |||||||||| |||| || ||||||||||||       |||||||||||||| |||||    
T  10592870 accttcttcttcagcacacaaaataaaaaacatataatttgaagaattttcttcccaaactaaaaagtttgaa 10592942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 32123175 - 32123091
Alignment:
Q  18 gaattgcaatgaagatgaaggggtatgcaagactgtctaaaaccacaataccatcctacaatgtaacaaatggcaaaggaaacat 102  Q
    ||||| ||||||| ||||| | | |||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  32123175 gaattacaatgaaaatgaaagagaatgcaagactatctataaccacaataccatcctagaatgtaacaaatggcaaaggaaacat 32123091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 282
Target Start/End: Complemental strand, 32120613 - 32120462
Alignment:
Q  133 taaacacatcataaaccgtctaaaccttgcttgttatgccac-cattcatagc-cgaacacatttcagattttataatctgaactcatgcccaatattgg 230  Q
    |||||||| |||||||| |||||||||||||||| ||||||| | | || ||  |  ||| |||| | |||||||||| |||||||||| |||||||||     
T  32120613 taaacacaccataaaccatctaaaccttgcttgtaatgccactcgtccacagttctgacagatttaatattttataatttgaactcatgtccaatattga 32120514  T
Q  231 ttcatatgatataatttgaaatgtgcgcagattgcattaaaagttatgattt 282  Q
    | ||  ||||||||||| |||||||||| |||||  |||||| |||||||||    
T  32120513 tgcaggtgatataatttaaaatgtgcgcggattgtgttaaaaattatgattt 32120462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 143
Target Start/End: Complemental strand, 31875191 - 31875163
Alignment:
Q  115 aaccgaccaaaaatgcattaaacacatca 143  Q
    |||||||||||||||||||||||||||||    
T  31875191 aaccgaccaaaaatgcattaaacacatca 31875163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 815689 - 815736
Alignment:
Q  113 ccaaccgaccaaaaatgcattaaacacatcataaaccgtctaaacctt 160  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||    
T  815689 ccaaccgaccaaaaatgcattaaacacaccacaaaccgtctaaacctt 815736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 27690462 - 27690415
Alignment:
Q  113 ccaaccgaccaaaaatgcattaaacacatcataaaccgtctaaacctt 160  Q
    ||||||||||||||||||||||||||| ||| |||||||| |||||||    
T  27690462 ccaaccgaccaaaaatgcattaaacacttcacaaaccgtccaaacctt 27690415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 29047888 - 29047956
Alignment:
Q  93 aaggaaacatctaaaatataccaaccgaccaaaaatgcattaaacacatcataaaccgtctaaaccttg 161  Q
    |||||||||| |||||| | | |||| |||||||||| ||| ||||||||| ||| |||||||||||||    
T  29047888 aaggaaacatttaaaatgttcaaacctaccaaaaatgaatttaacacatcacaaatcgtctaaaccttg 29047956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 16490160 - 16490115
Alignment:
Q  115 aaccgaccaaaaatgcattaaacacatcataaaccgtctaaacctt 160  Q
    |||||||||||||| ||||||||||| || |||||||| |||||||    
T  16490160 aaccgaccaaaaatacattaaacacaccacaaaccgtcaaaacctt 16490115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 50781628 - 50781584
Alignment:
Q  122 caaaaatgcattaaacacatcataaaccgtctaaaccttgcttgt 166  Q
    |||||||||||||||||||||| |||||||| ||||||| |||||    
T  50781628 caaaaatgcattaaacacatcacaaaccgtccaaaccttacttgt 50781584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 35990058 - 35990014
Alignment:
Q  113 ccaaccgaccaaaaatgcattaaacacatcataaaccgtctaaac 157  Q
    |||||||||||||||||||||||||||| || |||||||| ||||    
T  35990058 ccaaccgaccaaaaatgcattaaacacaccacaaaccgtccaaac 35990014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 28639979 - 28639932
Alignment:
Q  113 ccaaccgaccaaaaatgcattaaacacatcataaaccgtctaaacctt 160  Q
    |||||||||||||||||||||||||||| || ||||| || |||||||    
T  28639979 ccaaccgaccaaaaatgcattaaacacaccacaaaccatccaaacctt 28639932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 29582322 - 29582391
Alignment:
Q  92 aaaggaaacatctaaaatataccaaccgaccaaaaatgcattaaacacatcataaaccgtctaaaccttg 161  Q
    ||||||||||| || ||| | |||||||||| ||||||||||||||||| || ||| | || ||||||||    
T  29582322 aaaggaaacatttacaatgttccaaccgaccgaaaatgcattaaacacaccacaaatcatccaaaccttg 29582391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University