View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10159_high_9 (Length: 388)

Name: NF10159_high_9
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10159_high_9
NF10159_high_9
[»] chr7 (1 HSPs)
chr7 (19-378)||(47358677-47359033)


Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 47359033 - 47358677
Alignment:
Q  19 cttttaccgttgctttgctagctagccaccgtagtccataagcgtccaccctaaataattgaataaggtcccccacgggcattgacaattgggcacagac 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47359033 cttttaccgttgctttgctagctggccaccgtagtccataagcgtccaccctaaataatttaataaggtcccccacgggcattgacaattgggcacagac 47358934  T
Q  119 aattaagcatgaaccaaacttaaaatggtgagtttgctttttagactggagaaataaaaacaattaagacgtacgtacagcgtgcacggcaggggaagaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47358933 aattaagcatgaaccaaacttaaaatggtgagtttgctttttagactggagaaataaaaacaattaagacgtacgtacagcgtgcacggcaggggaagaa 47358834  T
Q  219 gtagacattgtttttaatgcatgcctttgtgattgtggttgatgatgatacagcaccattacattattacatgatgagtaccctaaagttttgctattat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||   |||||||||||||||||||||||||||||||||||    
T  47358833 gtagacattgtttttaatgcatgcctttgtgattgtggttgatgatgatgcagcactattac---attacatgatgagtaccctaaagttttgctattat 47358737  T
Q  319 agataaacataaacatgcatgcatgtggttcatcatcactgtccttttaggccatctctg 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47358736 agataaacataaacatgcatgcatgtggttcatcatcactgtccttttaggccatctctg 47358677  T

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