View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_11 (Length: 446)
Name: NF10159_low_11
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 20960946 - 20960614
Alignment:
| Q |
1 |
tatacatacatggggcctatttgcagtttgatgtgcaaatagtcatgatgaaacgatttctgtttggttttgcagtgaatgagaaagatatggccatctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20960946 |
tatacatacatggggcctatttgcagtttgatgtgcaaatagtcatgatgaaacgatttctgtttggttttgcagtgaatgagaaagatatggccatctc |
20960847 |
T |
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| Q |
101 |
tttccttgtannnnnnnngttgcttgagcccactgagtcagggcttgtctctaataaatgccagttacttttctagagtaggagtttgtctctggtttcc |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20960846 |
tttccttgtattttttt-gttgcttgagcccactgagtcagggcttgtctctaataaatgccagttacttttctagagtaggagtttgtctctagtttcc |
20960748 |
T |
|
| Q |
201 |
aatttgaagagtttctgagtgagaaaaaacaatcctttttattttctcactaattttcatgtcaacagttatcatgcagttctggtacagaaacttttga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20960747 |
aatttgaagagtttctgagtgagaaaaaacaatcctttttattttctcactaattttcatgtcaacagttatcatgcagttctggtacaaaaacttttga |
20960648 |
T |
|
| Q |
301 |
tataatgctaacatttgcattttctatgactgcc |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
20960647 |
tataatgctaacatttgcattttctatgactgcc |
20960614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 55 - 333
Target Start/End: Complemental strand, 21012279 - 21012001
Alignment:
| Q |
55 |
gatttctgtttggttttgcagtgaatgagaaagatatggccatctctttccttgtannnnnnnn-gttgcttgagcccactgagtcagggcttgtctcta |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| | |
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| T |
21012279 |
gatttctgtttggttttgcagtgaatgagaaagatatggctatctctttccttgtaattttttttgttgcttgagcccactgagtcagggtttgtctcca |
21012180 |
T |
|
| Q |
154 |
ataaatgccagttacttttctagagtaggagtttgtctctggtttccaatttgaa-gagtttctgagtgagaaaaaacaatcctttttattttctcacta |
252 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||||| |||||||| ||||||||||||||||||| |
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| T |
21012179 |
ataaatgccagttactcttctagagtaggagtttgtctctagtttccaatttgaaagagttt--gagtgagcaaaaacaaacctttttattttctcacta |
21012082 |
T |
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| Q |
253 |
attttcatgtcaacagttatcatgcagttctggtacagaaacttttgatataatgctaacatttgcattttctatgactgc |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |
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| T |
21012081 |
attttcatgtcaacagttatcatgcagttctggtacagaaacttttgatatcaagccaacatttgcattttctatgactgc |
21012001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 21012313 - 21012285
Alignment:
| Q |
7 |
tacatggggcctatttgcagtttgatgtg |
35 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
21012313 |
tacatggggcctatttgcagtttgatgtg |
21012285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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