View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_12 (Length: 423)
Name: NF10159_low_12
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 29140315 - 29140737
Alignment:
| Q |
1 |
ctgcaaacatattccccgtctctagcttctacctagagtttctcaagtatatcgtttgtttttaggttaggaacacgaggagtgtgaaccggactgggca |
100 |
Q |
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| T |
29140315 |
ctgcaaacatattcaccgtctctagcttctacctagagtttctcaagtatatcgtttgtttttaggttaggaacacgaggagtgtgaaccggactgggca |
29140414 |
T |
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| Q |
101 |
tctaacgggttacaaactagttcctggttcgaattgtttacctttagctggatcagaggctaagtttttaagaagagcagctttcttgaagcacaatcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29140415 |
tctaacgggttacaaactagttcctggttcgaattgtttacctttagctggatcagaggctaagtttttaagaagagcagctttcttgaagcacaatcta |
29140514 |
T |
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| Q |
201 |
cgggttactccttacgcacccgacgaattgcatcctggaggagaattccctaatcaaaatccccgcgttggagagggtttggctacttgggttaagcaaa |
300 |
Q |
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| T |
29140515 |
tgggttactccttacgcacgcgacgaattgcatcctggtggagagttccctaatcaaaatccccgcgttggagagggtttggctacttgggttaagcaaa |
29140614 |
T |
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| Q |
301 |
atcgaccattggaagaagctgacatagttctctggttagtttcttcaaaatatgttatcaaactatcaaagataatttatgtgcatggattatataatcc |
400 |
Q |
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| T |
29140615 |
atcgaccattggaagaagctgacatagttctctggttagtttcttcaaaatatgttatcaaactatcaaagataatttatgtgcatggattatataatcc |
29140714 |
T |
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| Q |
401 |
atttgtaggaattggagcctatc |
423 |
Q |
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| T |
29140715 |
atttgtatgaattggagcctatc |
29140737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 87 - 341
Target Start/End: Original strand, 14297944 - 14298198
Alignment:
| Q |
87 |
aaccggactgggcatctaacgggttacaaactagttcctggttcgaattgtttacctttagctggatcagaggctaagtttttaagaagagcagctttct |
186 |
Q |
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||||| |||||||| ||||| ||||||| ||||| |||||||| |||||||||||||||||||| ||||| || |||||| | ||||||||||||||| |
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| T |
14297944 |
aaccgaactgggcagctaacaggttacaggctagtacctggttcaaattgtttacctttagctggttcagaagccaagtttctgcgaagagcagctttct |
14298043 |
T |
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| Q |
187 |
tgaagcacaatctacgggttactccttacgcacccgacgaattgcatcctggaggagaattccctaatcaaaatccccgcgttggagagggtttggctac |
286 |
Q |
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||||||||||||| |||| |||||||| | | | | ||| |||||||||||||||| || |||||||||||||| || |||||||| || |||||||| |
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| T |
14298044 |
tgaagcacaatctttgggtcactccttatgttcacaatgaaatgcatcctggaggagagtttcctaatcaaaatccgcgagttggagatgggttggctac |
14298143 |
T |
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| Q |
287 |
ttgggttaagcaaaatcgaccattggaagaagctgacatagttctctggttagtt |
341 |
Q |
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| T |
14298144 |
ttgggttaagcaaaatagatcactggaagaagctgatatagttctttggttagtt |
14298198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 336
Target Start/End: Original strand, 34615475 - 34615655
Alignment:
| Q |
156 |
gaggctaagtttttaagaagagcagctttcttgaagcacaatctacgggttactccttacgcacccgacgaattgcatcctggaggagaattccctaatc |
255 |
Q |
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||||| ||||||||||||||||| |||||||||||||| ||| | |||| || | || ||| || ||| || ||||||||||||||| ||||||| |
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| T |
34615475 |
gaggccaagtttttaagaagagctgctttcttgaagcataatgtttgggtaacagcatattcacgtgatgaaatgtttcctggaggagaatttcctaatc |
34615574 |
T |
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| Q |
256 |
aaaatccccgcgttggagagggtttggctacttgggttaagcaaaatcgaccattggaagaagctgacatagttctctggt |
336 |
Q |
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| T |
34615575 |
aaaatccacgagttggcgaaggactagctacatggattaagcaaaaccggtctttggaagaaactaatatagttctatggt |
34615655 |
T |
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