View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_13 (Length: 410)
Name: NF10159_low_13
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 10592571 - 10592942
Alignment:
| Q |
17 |
tgaattgcaatgaagatgaaggggtatgcaagactgtctaaaaccacaataccatcctacaatgtaacaaatggcaaaggaaacatctaaaatataccaa |
116 |
Q |
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|||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10592571 |
tgaattgcaatgaagatgaaagggtataatagaccgtctaaaaccacaataccatcctagaatgtaacaaatggcaaaggaaacatctaaaatataccaa |
10592670 |
T |
|
| Q |
117 |
ccgaccaaaaatgcattaaacacatcataaaccgtctaaaccttgcttgttatgccaccattcatagccgaacacatttcagattttataatctgaactc |
216 |
Q |
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|||||||||||| |||||| |||||||||||| ||| |||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||| |
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| T |
10592671 |
ccgaccaaaaatacattaaccacatcataaactgtccaaaccttgcttgttatgccaccgtccacagccggacacatttcagattttataatctgaactc |
10592770 |
T |
|
| Q |
217 |
atgcccaatattggttcatatgatataatttgaaatgtgcgcagattgcattaaaagttatgatttcatggtttggcatgttttttattatatacttcga |
316 |
Q |
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||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| || |||||| |
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| T |
10592771 |
atgtccaatattggttc-tatgatataatttgaaatgtgcgcagattgcattaaaagttatgatttcatagtttgacatattttttatttgattcttcga |
10592869 |
T |
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| Q |
317 |
a-cttcttcttcagtacacaaaatagaaaa-atgtaatttgaagaannnnnnncccaaactaaaaagattgaa |
387 |
Q |
| |
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| |||||||||||| |||||||||| |||| || |||||||||||| |||||||||||||| ||||| |
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| T |
10592870 |
accttcttcttcagcacacaaaataaaaaacatataatttgaagaattttcttcccaaactaaaaagtttgaa |
10592942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 32123175 - 32123091
Alignment:
| Q |
18 |
gaattgcaatgaagatgaaggggtatgcaagactgtctaaaaccacaataccatcctacaatgtaacaaatggcaaaggaaacat |
102 |
Q |
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| T |
32123175 |
gaattacaatgaaaatgaaagagaatgcaagactatctataaccacaataccatcctagaatgtaacaaatggcaaaggaaacat |
32123091 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 282
Target Start/End: Complemental strand, 32120613 - 32120462
Alignment:
| Q |
133 |
taaacacatcataaaccgtctaaaccttgcttgttatgccac-cattcatagc-cgaacacatttcagattttataatctgaactcatgcccaatattgg |
230 |
Q |
| |
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|||||||| |||||||| |||||||||||||||| ||||||| | | || || | ||| |||| | |||||||||| |||||||||| ||||||||| |
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| T |
32120613 |
taaacacaccataaaccatctaaaccttgcttgtaatgccactcgtccacagttctgacagatttaatattttataatttgaactcatgtccaatattga |
32120514 |
T |
|
| Q |
231 |
ttcatatgatataatttgaaatgtgcgcagattgcattaaaagttatgattt |
282 |
Q |
| |
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| || ||||||||||| |||||||||| ||||| |||||| ||||||||| |
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| T |
32120513 |
tgcaggtgatataatttaaaatgtgcgcggattgtgttaaaaattatgattt |
32120462 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 143
Target Start/End: Complemental strand, 31875191 - 31875163
Alignment:
| Q |
115 |
aaccgaccaaaaatgcattaaacacatca |
143 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
31875191 |
aaccgaccaaaaatgcattaaacacatca |
31875163 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 815689 - 815736
Alignment:
| Q |
113 |
ccaaccgaccaaaaatgcattaaacacatcataaaccgtctaaacctt |
160 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
815689 |
ccaaccgaccaaaaatgcattaaacacaccacaaaccgtctaaacctt |
815736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 27690462 - 27690415
Alignment:
| Q |
113 |
ccaaccgaccaaaaatgcattaaacacatcataaaccgtctaaacctt |
160 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| ||||||| |
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|
| T |
27690462 |
ccaaccgaccaaaaatgcattaaacacttcacaaaccgtccaaacctt |
27690415 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 29047888 - 29047956
Alignment:
| Q |
93 |
aaggaaacatctaaaatataccaaccgaccaaaaatgcattaaacacatcataaaccgtctaaaccttg |
161 |
Q |
| |
|
|||||||||| |||||| | | |||| |||||||||| ||| ||||||||| ||| ||||||||||||| |
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| T |
29047888 |
aaggaaacatttaaaatgttcaaacctaccaaaaatgaatttaacacatcacaaatcgtctaaaccttg |
29047956 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 16490160 - 16490115
Alignment:
| Q |
115 |
aaccgaccaaaaatgcattaaacacatcataaaccgtctaaacctt |
160 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||||||| ||||||| |
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| T |
16490160 |
aaccgaccaaaaatacattaaacacaccacaaaccgtcaaaacctt |
16490115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 50781628 - 50781584
Alignment:
| Q |
122 |
caaaaatgcattaaacacatcataaaccgtctaaaccttgcttgt |
166 |
Q |
| |
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|||||||||||||||||||||| |||||||| ||||||| ||||| |
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|
| T |
50781628 |
caaaaatgcattaaacacatcacaaaccgtccaaaccttacttgt |
50781584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 35990058 - 35990014
Alignment:
| Q |
113 |
ccaaccgaccaaaaatgcattaaacacatcataaaccgtctaaac |
157 |
Q |
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|||||||||||||||||||||||||||| || |||||||| |||| |
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| T |
35990058 |
ccaaccgaccaaaaatgcattaaacacaccacaaaccgtccaaac |
35990014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 28639979 - 28639932
Alignment:
| Q |
113 |
ccaaccgaccaaaaatgcattaaacacatcataaaccgtctaaacctt |
160 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| || ||||||| |
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|
| T |
28639979 |
ccaaccgaccaaaaatgcattaaacacaccacaaaccatccaaacctt |
28639932 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 29582322 - 29582391
Alignment:
| Q |
92 |
aaaggaaacatctaaaatataccaaccgaccaaaaatgcattaaacacatcataaaccgtctaaaccttg |
161 |
Q |
| |
|
||||||||||| || ||| | |||||||||| ||||||||||||||||| || ||| | || |||||||| |
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| T |
29582322 |
aaaggaaacatttacaatgttccaaccgaccgaaaatgcattaaacacaccacaaatcatccaaaccttg |
29582391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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