View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_14 (Length: 389)
Name: NF10159_low_14
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 5032053 - 5032424
Alignment:
| Q |
1 |
atttatttatttttctctctttagacctaatgattatccacaatgcttagcaaggtacaattcaagcaatcaaccccttttcatgtgcacttaacttatt |
100 |
Q |
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| T |
5032053 |
atttatttatttttctctctttagacctaatgattatccacaatgcttagcaaggtacaattcaagcaatcaaccccttttcatgtgcacttaacttatt |
5032152 |
T |
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| Q |
101 |
agttcaatattatcagcattaattacttgtgtataataataataatttatggtttacaaattattggtataatggtggtcctaaataaaatactaactag |
200 |
Q |
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| T |
5032153 |
agttcaatattatcagcattaattaattgtgtataataataataatttatggtttacaaattattggtataatggtggtcctaaataaaatactaactag |
5032252 |
T |
|
| Q |
201 |
tgtatttagttagatccaatccatgaactccccacaaattgtacctacaaggtacagtggtgtggtacttgttatttgatggcctcaccatgagcagaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
5032253 |
tgtatttagttagatccaatccatgaactccccacaaattgtacctacaaggtacagtgatgtggtacttgttatttgatggcctcaccatgtgcagaat |
5032352 |
T |
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| Q |
301 |
atatacatacattttttaccttagataaaaaagttactttaatcctataatttaatttttaatcttttatat |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5032353 |
atatacatacattttttaccttagataaaaaagttactttaatcctgtaatttaatttttaatcttttatat |
5032424 |
T |
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