View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_16 (Length: 374)
Name: NF10159_low_16
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_16 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 250 - 374
Target Start/End: Original strand, 18656073 - 18656197
Alignment:
| Q |
250 |
ttatccatgtcaaacctatgtttactacaaagcaacaccaccaaattacctcgatttagctaccatttcagaccttttccaacttagtcgtttaatgatc |
349 |
Q |
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| T |
18656073 |
ttatccatgtcaaacctatgtttactacaaagcaacaccaccaaattacctcgatttagctaccatttcagaccttttccaacttagtcgtttaatgatc |
18656172 |
T |
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| Q |
350 |
tcaaaaccaagcaatatctcttcac |
374 |
Q |
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| T |
18656173 |
tcaaaaccaagcaatatctcttcac |
18656197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 18655938 - 18656002
Alignment:
| Q |
118 |
tctccaaccccatcaccaccaattatcaaccttcatcttcatcctactcttccctttccataaat |
182 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18655938 |
tctcaaaccccatcaccaccaattatcaaccttcatcttcatcctactcttccctttccttaaat |
18656002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 18655815 - 18655848
Alignment:
| Q |
1 |
tgactagtcagatctcaaagccgactcatccccc |
34 |
Q |
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| T |
18655815 |
tgactagtcagatctcaaagccgactcatccccc |
18655848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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