View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_17 (Length: 364)
Name: NF10159_low_17
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 14755720 - 14755366
Alignment:
| Q |
1 |
gatagagatagagatagagatataactgaccttgcttcctctattgttagattacccatcggtgaagaccgtccaatttgtgcacaactcttagttgaag |
100 |
Q |
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| T |
14755720 |
gatagagatagagatagagatataactgaccttgcttcctctattgttagattacccatcggtgaagaccgtccaatttgtgcacaactcttagttgaag |
14755621 |
T |
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| Q |
101 |
gcgtcatttcggccnnnnnnntcggtgaaaataagggctttcaacgctttactgggtttgaatgagattttgaattctgacagcttgataaatcatttca |
200 |
Q |
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| T |
14755620 |
gcgtcatttcggccaaaaaaatcggtgaaaataagggctttcaacgctttactgggtttgaatgagattttgaattctgacagcttgataaatcatttca |
14755521 |
T |
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| Q |
201 |
tcatccttcatgctaagtcaggtctgaatatgatttgcttcaacagttcattcgtccacactgttatgggatgtgccaaaagtagcgcctccgtttcttg |
300 |
Q |
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| T |
14755520 |
tcatccttcatgctaagtcaggtctgaatatgatttgcttcaacagttcattcgtccacactgttatgggatgtgccaaaagtagcgcctccgtttcttg |
14755421 |
T |
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| Q |
301 |
gacgtcgttatcatagtcaaatctatcttttctatcctttgataccttgtctctg |
355 |
Q |
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| T |
14755420 |
gacgtcgttatcatagtcaaatctatcttttctatcctttgataccttgtctctg |
14755366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 14755781 - 14755720
Alignment:
| Q |
1 |
gatagagatagagatagagatataactgaccttgcttcctctattgttagattacccatcgg |
62 |
Q |
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| T |
14755781 |
gatagagatagagatagagatataactgaccttgcttcctctattgttagattacccatcgg |
14755720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 17581586 - 17581658
Alignment:
| Q |
28 |
gaccttgcttcctctattgttagattacccatcggtgaagaccgtccaatttgtgcacaactcttagttgaag |
100 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17581586 |
gaccctgcttcctttattgttagattacccatcggtgaagaccgtccaatttgtgcacaactcttagttgaag |
17581658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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