View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_18 (Length: 347)
Name: NF10159_low_18
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 14 - 332
Target Start/End: Complemental strand, 50386649 - 50386331
Alignment:
| Q |
14 |
gtggttgaaataattttgttttaacttgaaggttattgtcacaagcttcacaagtattccataaactgaaaatgatccatgatgagcttgttgtactttt |
113 |
Q |
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| T |
50386649 |
gtggttgaaataattttgttttaacttgaaggttattgtcacaagcttcacaagtattccataaactgaaaatgatccatgatgagcttgttgtactttt |
50386550 |
T |
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| Q |
114 |
atgggtaataatgtcttcaatgttgagtttgaagccttcatctttgtaataactaacccaagttcctaggctgagtttttctttgagaataatgtccata |
213 |
Q |
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| T |
50386549 |
atgggtaataatgtcttcaatgttgagtttgaagccttcatctttgtaataactaacccaagttcctaggctgagtttttctttgagaataatgtccata |
50386450 |
T |
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| Q |
214 |
tctaatggatacaactctttggttttcaagattcttgtgtagaaggaaattgcttggtctatacttatcttgtcaattttgacatccttcttagaaatgt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50386449 |
tctaatggatacaactctttggttttcaagattcttgtgtagaaggaaattgcttggtctatacttatcttgtcaattttgacatccttcttagaaatgt |
50386350 |
T |
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| Q |
314 |
ggtttgttgggaaactagt |
332 |
Q |
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||||||||||||||||||| |
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| T |
50386349 |
ggtttgttgggaaactagt |
50386331 |
T |
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