View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_19 (Length: 338)
Name: NF10159_low_19
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 12 - 322
Target Start/End: Complemental strand, 43030763 - 43030453
Alignment:
| Q |
12 |
aagaaattagaagtaacagttagattcaacaagcttctcaaagaacatatcacatcagatatatcaccagaaagattgttatgtgccaaattaagaactt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43030763 |
aagaaattagaagtaacagttagattcaacaagcttctcaatgaacatatcacatcagatatatcaccagaaagattgttatgtgccaaattaagaactt |
43030664 |
T |
|
| Q |
112 |
caatatcttgcaaacatgatattgtatctggcaaatgacctacaagtgaattgaaactcacatcaagaacttgcacttctgtgaatataccaacaccttg |
211 |
Q |
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| T |
43030663 |
caatatcttgcaaacatgatattgtatctggcaaatgacctacaagtgaattgaaactcacatcaagaacttgcacttctgtgaatataccaacaccttg |
43030564 |
T |
|
| Q |
212 |
aggtatacaacctgttaactggttattaagaaaaagaatctcttttagtttaggactcatgaaaccaaagcttgtgggaatgtttccactcaacatgttg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43030563 |
aggtatacaacctgttaactggttattaagaaaaagaatctcttttagtttaggactcatgaaaccaaagcttgtgggaatgtttccactcaacatgttg |
43030464 |
T |
|
| Q |
312 |
ttagctaaatt |
322 |
Q |
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||||||||||| |
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| T |
43030463 |
ttagctaaatt |
43030453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 34200966 - 34201273
Alignment:
| Q |
12 |
aagaaattagaagtaacagttagattcaacaagcttctcaaagaacatatcacatcagatatatcaccagaaagattgttatgtgccaaattaagaactt |
111 |
Q |
| |
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||||||||| ||| |||||||| ||| ||| || ||||||||||| || | ||| |||| || |||||||| | ||||| ||||| ||||| |||| |
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| T |
34200966 |
aagaaattataagcaacagttaaattagccaaactcctcaaagaacagattatatctgataactctccagaaagctgattatgagccaagttaagcactt |
34201065 |
T |
|
| Q |
112 |
caatatcttgcaaacatgatattgtatctggcaaatgacctacaagtgaattgaaactcacatcaagaacttgcacttctgtgaatataccaacaccttg |
211 |
Q |
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| |||| || |||||||||| |||||| || |||||||| | | |||||||||||||||||||||||||| || || || || | ||||| |||| |
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| T |
34201066 |
ctatattctgtaaacatgataatgtatcaggtaaatgacccatcaatgaattgaaactcacatcaagaacttccatctcagtaaaaagtccaactccttc |
34201165 |
T |
|
| Q |
212 |
aggtatacaacctgttaactggttattaagaaaaagaatctcttttagtttaggactcatgaaaccaaagcttgtgggaatgtttccactcaacatgttg |
311 |
Q |
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|||||||||||| |||||||| ||||| ||||| | ||||||||| | || | | |||||||||||| || | ||||| ||||||||||| |||| |
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| T |
34201166 |
aggtatacaaccagttaactgattattcagaaacaaaatctctttgatctttgatcccatgaaaccaaaactagctggaatatttccactcaatttgtta |
34201265 |
T |
|
| Q |
312 |
ttagctaa |
319 |
Q |
| |
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|||||||| |
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| T |
34201266 |
ttagctaa |
34201273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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