View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10159_low_21 (Length: 331)

Name: NF10159_low_21
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10159_low_21
NF10159_low_21
[»] chr3 (2 HSPs)
chr3 (20-325)||(36515018-36515323)
chr3 (20-325)||(36805903-36806208)
[»] chr7 (2 HSPs)
chr7 (237-276)||(41756718-41756757)
chr7 (211-276)||(41764634-41764699)


Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 36515323 - 36515018
Alignment:
Q  20 caatggagggaatatttatcaacttattggaaaacaatactttgtttcggactcagaatccaaatgaagctcatgtctactttcttccatttagtgttgt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36515323 caatggagggaatatttatcaacttattggaaaacaatactttgtttcggactcagaatccaaatgaagctcatgtctactttcttccatttagtgttgt 36515224  T
Q  120 tatgatccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgttcatatcatatcacacaaatatgct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36515223 tatgatccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgttcatatcatatcacacaaatatgct 36515124  T
Q  220 tattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggtacttccttgaccatttttgtgtccagtgtttgtgtccgtatctc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  36515123 tattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggtacttccttgaccatttttgtgtccagtgtctgtgtccgtatctg 36515024  T
Q  320 tgcttc 325  Q
    ||||||    
T  36515023 tgcttc 36515018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 36805903 - 36806208
Alignment:
Q  20 caatggagggaatatttatcaacttattggaaaacaatactttgtttcggactcagaatccaaatgaagctcatgtctactttcttccatttagtgttgt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  36805903 caatggagggaatatttatcaacttattggaaaacaatactttgtttcggactcgtaatccaaatgaagctcatgcctactttcttccatttagtgttgt 36806002  T
Q  120 tatgatccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgttcatatcatatcacacaaatatgct 219  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36806003 tatgatccttgaacatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgttcatatcatatcacacaaatatgca 36806102  T
Q  220 tattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggtacttccttgaccatttttgtgtccagtgtttgtgtccgtatctc 319  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||  |||| |||||||||||||     
T  36806103 tattggaatagaagttatggagctgatcatttcatgctttcttgtcatgattgggtactttcttgaccatttctgtgtctggtgtctgtgtccgtatctg 36806202  T
Q  320 tgcttc 325  Q
    ||||||    
T  36806203 tgcttc 36806208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 41756718 - 41756757
Alignment:
Q  237 tggagctgaccatttcatgctttcttgtcatgattgggta 276  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  41756718 tggagctgatcatttcatgctttcttgccatgattgggta 41756757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 41764634 - 41764699
Alignment:
Q  211 aaatatgcttattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggta 276  Q
    |||||| | ||||||||  ||||| |||||||||| |||||||| ||| |||| ||||||||||||    
T  41764634 aaatatccctattggaaccgaagtcatggagctgatcatttcatacttgcttgccatgattgggta 41764699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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