View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_23 (Length: 324)
Name: NF10159_low_23
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_23 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 40391715 - 40392029
Alignment:
| Q |
11 |
cagagaacatggacattcatgacattctaggattagcatctccgttcatgaacaacacaagactgctttggaatcacagatgaggatttaaaatcaagat |
110 |
Q |
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| T |
40391715 |
cagagaacatggacattcatgacattctaggattagcatctctgttcatgaacaacacaagactgctttggaatcacagatgaggatttaaaatcaagat |
40391814 |
T |
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| Q |
111 |
tgtgatgaacttatacaagtaacagttgcttttggggacatacaagaattagaacgaacattgtgacgtgctcatagatttcgcgttctttggtttgatg |
210 |
Q |
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| T |
40391815 |
tgtgatgaacttatacaagtaacagttgcttttggggacatacaagaattagaacgaacattgtgacgggctcatagatttcgcgttctttggtttgatg |
40391914 |
T |
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| Q |
211 |
gtgacgacattggatgcagctgtttctcgaaacaatgttgccaacaattgtgttgttacataatagtgaattggttggttgacttaaag-atgatagaac |
309 |
Q |
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| T |
40391915 |
gcgacgacattggatgcagctgtttctcgaaacaatgttgccaacaattgtgttgttacataataatgaattggttggttgacctaaagcatgatagaac |
40392014 |
T |
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| Q |
310 |
attattgatctaacc |
324 |
Q |
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| T |
40392015 |
attattgatctaacc |
40392029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 40380374 - 40380686
Alignment:
| Q |
11 |
cagagaacatggacattcatgacattctaggattagcatctccgttcatgaacaacacaagactgctttggaatcacagatgaggatttaaaatcaagat |
110 |
Q |
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| T |
40380374 |
cagagaacatgaacattcatgacattctaggattagcatctctgttcatgaacaacacaagactgctttggaatcacagatgaggatttaaaatcaagat |
40380473 |
T |
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| Q |
111 |
tgtgatgaacttatacaagtaacagttgcttttggggacatacaagaattagaacgaacattgtgacgtgctcatagatttcgcgttctttggtttgatg |
210 |
Q |
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| T |
40380474 |
tgtgatgaacttatacaagtaacagttgcttttggggacatacaagaattagaacgaacattgtgacgggctcatagatttcgcgttctttggtttgatg |
40380573 |
T |
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| Q |
211 |
gtgacgacattggatgcagctgtttctcgaaacaatgttgccaacaattgtgttgttacataatagtgaattggttggttga-cttaaagatgatagaac |
309 |
Q |
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| T |
40380574 |
gtgacgacattggatgcagctgtttctcgaaacaatgttgctaataattgtgttgttacataatagtggattggttggttgatctcaagcatgatagaac |
40380673 |
T |
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| Q |
310 |
attattgatctaa |
322 |
Q |
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| T |
40380674 |
attattgatctaa |
40380686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 322
Target Start/End: Complemental strand, 41054737 - 41054416
Alignment:
| Q |
11 |
cagagaacatggacattcatgacattctaggattagcatctcc-gtt--catgaacaacacaagactgctttggaatcacagatgaggatttaaaatcaa |
107 |
Q |
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| T |
41054737 |
cagagaacaaggacattcgcgacattccaggattagctcctcctgttgtcacgaacaacagaagactgctttggaatcacagttgattattttaagtgaa |
41054638 |
T |
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| Q |
108 |
gattgtgatgaacttatacaagtaacagttgcttttggggac--atacaagaattagaacgaacattgtgacgtgctcata-----gatttcgcgttctt |
200 |
Q |
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| T |
41054637 |
gattgtgatgaacttggacgagggacaattg-ttttgggaacgcacacaaggattaaaatgaacattgtgatgatctcatcatattgattttgtgctctt |
41054539 |
T |
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| Q |
201 |
tggtttgatggtgacgacattggatgcagctgtttctcgaaacaatgttgccaacaattgtgttgttacataatagtgaattggttggttgacttaaag- |
299 |
Q |
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| T |
41054538 |
tggtttgatggcgatgacaatggatgcagcttttgctcaaaacaatgttgccaataattgtgttgttacataatagtggattggttggttgacctgaagc |
41054439 |
T |
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| Q |
300 |
atgatagaacattattgatctaa |
322 |
Q |
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|||| |||||||||||||||||| |
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| T |
41054438 |
atgagagaacattattgatctaa |
41054416 |
T |
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