View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_24 (Length: 319)
Name: NF10159_low_24
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 88 - 296
Target Start/End: Original strand, 34568386 - 34568594
Alignment:
| Q |
88 |
atttgtaaggacaatatgcaacataaattaaaattacaatactagttatgtctactcggctcaaacaataataagattaaaaacaattaagtaccaaata |
187 |
Q |
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| T |
34568386 |
atttgtaaggacaatatgcaacataaattaaaattacaatactagttatgtctactcggctcaaacaataataagatttaaaacaattaagtaccaaata |
34568485 |
T |
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| Q |
188 |
tagcatattgtatcaaaatgtgtcatcagagaagcaaaacaagcagctccgacattatacattaccaaatcaaataacaagaattaacccgtatacattt |
287 |
Q |
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| T |
34568486 |
tagcatattgtatcaaaatgtttcatcagagaagcaaaacaagcagctcccacattatacatgaccaaatcaaataacaagtattaacccgtatacattt |
34568585 |
T |
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| Q |
288 |
atcctttac |
296 |
Q |
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||||||||| |
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| T |
34568586 |
atcctttac |
34568594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 34568357 - 34568388
Alignment:
| Q |
16 |
aaaaggcaaagccatgatcgactctacaaatt |
47 |
Q |
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| T |
34568357 |
aaaaggcaaagccatgatcgactctacaaatt |
34568388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 8569135 - 8569206
Alignment:
| Q |
174 |
ttaagtaccaaatatagcatattgtatcaaaatgtgtcatcagagaagcaaaacaagcagctccgacattat |
245 |
Q |
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| T |
8569135 |
ttaagtaccaaatatagcatactatatcaaaatgtgtcatcagaaaatcaaaacaaccagatccaacattat |
8569206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 8566433 - 8566489
Alignment:
| Q |
83 |
actccatttgtaaggacaatatgcaacataaattaaaattacaatactagttatgtc |
139 |
Q |
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|||| ||||||||||||||| | ||||| |||||||||||| ||||||| ||||||| |
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| T |
8566433 |
actcaatttgtaaggacaatcttcaacagaaattaaaattataatactacttatgtc |
8566489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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