View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_27 (Length: 299)
Name: NF10159_low_27
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 53515415 - 53515149
Alignment:
| Q |
14 |
gagaagaataacaaggttgagagaaagaccggcttattagtattactgacggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgattt |
113 |
Q |
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| T |
53515415 |
gagaagaataacaaggttgagagaaagaccggcttattagtattactgacggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgattt |
53515316 |
T |
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| Q |
114 |
tgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatgcatttcagtttgacggaaaggaaggatcaatggactgaaattctgtc |
213 |
Q |
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| T |
53515315 |
tgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatgcatttcagtttgacggaaaggaaggatcaatggactgaaattctgtc |
53515216 |
T |
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| Q |
214 |
atctgttccaagagcttccatgtatcacaattttctggtctgttttagaatatacataagatagtag |
280 |
Q |
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| T |
53515215 |
atctgttccaagagcttccatgtatcacaattttctggtctgttttagaatatacataagatagtag |
53515149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 67 - 278
Target Start/End: Complemental strand, 53526199 - 53525990
Alignment:
| Q |
67 |
aaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatg |
166 |
Q |
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| T |
53526199 |
aaggaaggatgaaaacttcgtagagtgagtgatattctatttgattttgatttgaaatatgtttattctttcatgttttgtgattgttgcccccggaatt |
53526100 |
T |
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| Q |
167 |
catttcagtttgacggaaaggaaggatcaatggactgaaattctgtcatctgttccaagagcttccatgtatcacaattttctggtctgttttagaatat |
266 |
Q |
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| T |
53526099 |
tgtttcagtttgtcggaaaggaaggatcagtggactgaagttctttcatcggagccaagagcttccatgtatcacaattttctggtcagttttaga--tt |
53526002 |
T |
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| Q |
267 |
acataagatagt |
278 |
Q |
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|||||||||||| |
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| T |
53526001 |
acataagatagt |
53525990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 53526670 - 53526541
Alignment:
| Q |
60 |
tgacggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctc |
159 |
Q |
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|||||||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| || ||||| | || |||| ||||||||||| |
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| T |
53526670 |
tgacggaacggaaggatgaaaacttcatagagtgagtggtattctgattgattttgatttgaaatgtgtttattctttcatgttttgtgattgttgcctc |
53526571 |
T |
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| Q |
160 |
cggaatgcatttcagtttgacggaaaggaa |
189 |
Q |
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| T |
53526570 |
tggaatttgtttcagtttgacggaaaggaa |
53526541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 53526433 - 53526306
Alignment:
| Q |
62 |
acggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccg |
161 |
Q |
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||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||| |||||||| | || || | ||||||||||| | |
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| T |
53526433 |
acggaaaggaaggatgaaaactacatagagtgagtggtattttgtttgattttgatttgaaatgtgtttaatctttcatgttttttgattgttgcctctg |
53526334 |
T |
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| Q |
162 |
gaatgcatttcagtttgacggaaaggaa |
189 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
53526333 |
gaatctgtttcagtttgacggaaaggaa |
53526306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 193
Target Start/End: Complemental strand, 53526553 - 53526419
Alignment:
| Q |
60 |
tgacggaaaggaaggatgaaaacatcataaagtgagtggt-attctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcct |
158 |
Q |
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||||||||||||| ||| ||||| ||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||| || |||| | || ||||| |
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| T |
53526553 |
tgacggaaaggaatgataaaaacttcatagagtgagtggttattctatttgattttgatttgaaatgtgtttaatctttcgtgttttgtgactgctgcct |
53526454 |
T |
|
| Q |
159 |
ccggaatgcatttcagtttgacggaaaggaaggat |
193 |
Q |
| |
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| ||||| ||||||||||| ||||||||||||||| |
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| T |
53526453 |
ctggaattcatttcagtttaacggaaaggaaggat |
53526419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 69 - 193
Target Start/End: Complemental strand, 53526778 - 53526654
Alignment:
| Q |
69 |
ggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatgca |
168 |
Q |
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|||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||| |||||||| | | ||| |||| |||| ||| ||| | |
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| T |
53526778 |
ggaaggataaaaacttcatagagtgagtggtattctgtttgattttgatttcaaatgtgtttaatctttcatgatgtgtgattgctgcccccgaaattcg |
53526679 |
T |
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| Q |
169 |
tttcagtttgacggaaaggaaggat |
193 |
Q |
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|||||||||||||||| |||||||| |
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| T |
53526678 |
tttcagtttgacggaacggaaggat |
53526654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 53526318 - 53526240
Alignment:
| Q |
60 |
tgacggaaaggaaggatgaaaacatcataaagtgagtggt-attctgtttgattttgatttgaaatgtgtataatcttt |
137 |
Q |
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| T |
53526318 |
tgacggaaaggaatgctaaaaacttcatagagtgagtggttattctgtttgattttgatttgaaatgtgtttaatcttt |
53526240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 53550245 - 53550092
Alignment:
| Q |
99 |
tattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatgcatttcagtttgacggaaaggaaggatcaatg |
198 |
Q |
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|||||||||||||| ||||||| ||||||| |||| ||| | || |||| | || ||| || ||||| ||||||| || |||||| |||||| || || |
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| T |
53550245 |
tattctgtttgattctgatttggaatgtgtttaatttttcatgttttgtgactgctgcttctggaattggtttcagtctggcggaaaagaaggagcagtg |
53550146 |
T |
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| Q |
199 |
gactgaaattctgtcatctgttccaagagcttccatgtatcacaattttctggt |
252 |
Q |
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|||||||||||| |||| | |||||||||| | | |||||||||||| |||| |
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| T |
53550145 |
gactgaaattctttcatgggagccaagagctttcgtctatcacaattttttggt |
53550092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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