View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10159_low_28 (Length: 299)
Name: NF10159_low_28
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 284
Target Start/End: Complemental strand, 38213217 - 38212938
Alignment:
| Q |
6 |
aggagcagagatgcagactctcccttaccctttaggggacaattgttcaggtacaccttaaaatcccacattgtttgaaaatcgaagcaaataatagttt |
105 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38213217 |
aggagcagacatgcagactctcccttaccctttagggggcaattgttcaggtacaccttaaaatcccacattgcttgaaaatcgaagcaaataatagttt |
38213118 |
T |
|
| Q |
106 |
atatacaacattcacactcctcaatttaacgagacaccttttataaaagacaaaactatgaagaacttatatccaaaataaacgatacctcaaaacacat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||||||| ||| |
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| T |
38213117 |
atatacaacattcacactcctcaatttaacgagacaccttttataaaagagaaaattatgaaaaacttatatccaaaatagacgatacctcaaaacgcat |
38213018 |
T |
|
| Q |
206 |
tgtagcatgttggaggtataacatagcaatatt-tttctctcatactaacaaaccacttttatcactcaaggtaaaattt |
284 |
Q |
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||||||||| | ||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38213017 |
tgtagcatgctagaggtgtaacataacaatattctttctctcatactaacaaaccacttttatcactcaaggtaaaattt |
38212938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 31264737 - 31264831
Alignment:
| Q |
100 |
tagtttatatacaacattcacactcctcaatttaacgagacaccttttataaaagacaaaactatgaagaacttatatccaaaataaacgatacct |
195 |
Q |
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||||||||||| |||||||||||||||||| || ||||||| |||||||||||| ||||| ||||| ||||| ||||| ||||| |||||| |
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| T |
31264737 |
tagtttatata-aacattcacactcctcaacccaatgagacactttttataaaagagaaaaccgtgaaggacttacgcccaaagtaaacaatacct |
31264831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 38744963 - 38744814
Alignment:
| Q |
54 |
aggtacaccttaaaatcccacattgtttgaaaatcgaagcaaataatagtttatatacaacattcacactcctcaatttaacgagacaccttttataaaa |
153 |
Q |
| |
|
|||||||||||||| || ||||||| ||| ||||||| |||||| |||||||||||| |||| |||||||| ||||| ||||| || |||||| ||||| |
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| T |
38744963 |
aggtacaccttaaagtctcacattgcttggaaatcgaggcaaattatagtttatatataacactcacactcttcaatcaaacgaaacgccttttgtaaaa |
38744864 |
T |
|
| Q |
154 |
gacaaaactatgaagaacttatatccaaaataaacgatacctcaaaacac |
203 |
Q |
| |
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|||||||| | | |||||| |||||||| | | |||||||||||||| |
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| T |
38744863 |
gacaaaaccgtaataaacttacatccaaaacatccaatacctcaaaacac |
38744814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 5227604 - 5227662
Alignment:
| Q |
101 |
agtttatatacaacattcacactcctcaatttaacgagacaccttttataaaagacaaaa |
160 |
Q |
| |
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|||||||| ||||||| |||||| |||| ||||||||||||| ||||||||| ||||||| |
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|
| T |
5227604 |
agtttataaacaacatccacacttctca-tttaacgagacacattttataaatgacaaaa |
5227662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 42690352 - 42690249
Alignment:
| Q |
57 |
tacaccttaaaatcccacattgtttgaaaatcgaagcaaataatagtttatatacaacattcacactcctcaatttaacgagacaccttttataaaagac |
156 |
Q |
| |
|
|||||||||||| | |||||||||| ||||||||| || ||||||||||||| || |||||||||||||| ||||||| | ||||||||| ||| |
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| T |
42690352 |
tacaccttaaaaccttacattgtttgtgaatcgaagctaagggtagtttatatacagcaatcacactcctcaatccaacgagatatattttataaatgac |
42690253 |
T |
|
| Q |
157 |
aaaa |
160 |
Q |
| |
|
|||| |
|
|
| T |
42690252 |
aaaa |
42690249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 42690469 - 42690565
Alignment:
| Q |
56 |
gtacaccttaaaatcccacattgtttgaaaatcgaagcaaataatagtttatatacaacattcacactcctcaatttaacgagacaccttttataaaag |
154 |
Q |
| |
|
|||||||||||| || |||||||||||| | |||| | |||| || | ||||||||||| ||||||| ||||| |||| |||||||||||||||||| |
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|
| T |
42690469 |
gtacaccttaaagtctcacattgtttgacagtcgatgtcaatagtaat--atatacaacatccacactcatcaatctaacaagacaccttttataaaag |
42690565 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 43563124 - 43563059
Alignment:
| Q |
80 |
ttgaaaatcgaagcaaataatagtttatatacaacattcacactcctcaatttaacgagacacctttt |
147 |
Q |
| |
|
|||| ||||||||| |||||||||||||| ||| || | ||||||||||||||| |||||| ||||| |
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| T |
43563124 |
ttgagaatcgaagctaataatagtttataaaca--atactcactcctcaatttaatgagacatctttt |
43563059 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 39074399 - 39074502
Alignment:
| Q |
100 |
tagtttatatacaacattcacactcctcaatttaacgagacaccttttataaaagacaaaactatgaagaacttatatccaaaataaacgatacctcaaa |
199 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||| |||| ||||||||| |||||||| || || |||||| ||||| || | |||||||||| |
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|
| T |
39074399 |
tagtttatatataacactcacactcctcaatttaagaagacgtattttataaatgacaaaaccataaaaggcttatacccaaagcaagcaatacctcaaa |
39074498 |
T |
|
| Q |
200 |
acac |
203 |
Q |
| |
|
|||| |
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|
| T |
39074499 |
acac |
39074502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 46177631 - 46177569
Alignment:
| Q |
98 |
aatagtttatatacaacattcacactcctcaatttaacgagacaccttttataaaagacaaaa |
160 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||| | | ||||| ||||||||||| |
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|
| T |
46177631 |
aatagtttatatacaatattcacactcctcaatccaacgaaattctttttacaaaagacaaaa |
46177569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 32989045 - 32988985
Alignment:
| Q |
100 |
tagtttatatacaacattcacactcctcaatttaacgagacaccttttataaaagacaaaa |
160 |
Q |
| |
|
|||||||||||||||| || ||||| | || |||||||||||||||||||| ||||||| |
|
|
| T |
32989045 |
tagtttatatacaacactcgcactctttaaaccaacgagacaccttttataaaggacaaaa |
32988985 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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