View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_32 (Length: 280)
Name: NF10159_low_32
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 34333342 - 34333089
Alignment:
| Q |
11 |
caaagggttaagcaaattttccgtggggtttttgaggatagttgatagttttgttcctgcgatatttgcaactagaaatgatgcaccttgatcgttacat |
110 |
Q |
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| T |
34333342 |
caaagggttaagcaaattttccgtggggtttttgaggatagttgatagttttgttcctgcgatatttgcaactagaaatgacgcaccttgatcgttacat |
34333243 |
T |
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| Q |
111 |
tcgatggtaagctgatctttgaacctgcctgcaaaggggtagtatatggatagaatttgagataaagaattcttgaggtgtgagattttggatgtttggt |
210 |
Q |
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| T |
34333242 |
tcgatggaaagctgatctttgaacctgcctgcaaaggggtagtatatggatagaatttgagataaagaattcttgaggtgtgagattttggatgtttggt |
34333143 |
T |
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| Q |
211 |
cacaaactttggtatcatcgtagaagaaaagtaggggcacatagttacggaaag |
264 |
Q |
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| T |
34333142 |
cacaaactttggtatcatcgtagaagaaaagtaggggcacatagttacggaaag |
34333089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 34320254 - 34320170
Alignment:
| Q |
94 |
caccttgatcgttacattcgatggtaagctgatctttgaacctgcctgcaaaggggtagtatatggatagaatttgagataaaga |
178 |
Q |
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| T |
34320254 |
caccttgatcattacattcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaaga |
34320170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 34329162 - 34329078
Alignment:
| Q |
94 |
caccttgatcgttacattcgatggtaagctgatctttgaacctgcctgcaaaggggtagtatatggatagaatttgagataaaga |
178 |
Q |
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| T |
34329162 |
caccttgatcattacattcgacggtaattttatctttcaaccttccagcaaaaggataatatttggataaaagttgagataaaga |
34329078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 45306920 - 45307039
Alignment:
| Q |
94 |
caccttgatcgttacattcgatggtaagctgatctttgaacctgcctgcaaaggggtagtatatggatagaatttgagataaagaattcttgaggtgtga |
193 |
Q |
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| T |
45306920 |
caccttggtcgttacattcaatggtaattttatctttcaacctaccagcgaaaatgtagtatttggatagaatttgagataaggattttctgagttgtga |
45307019 |
T |
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| Q |
194 |
gattttggatgtttggtcac |
213 |
Q |
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| T |
45307020 |
tatttttgaattttggtcac |
45307039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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