View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10159_low_34 (Length: 269)

Name: NF10159_low_34
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10159_low_34
NF10159_low_34
[»] chr6 (16 HSPs)
chr6 (1-269)||(4558642-4558910)
chr6 (90-269)||(4572483-4572660)
chr6 (156-269)||(4587149-4587260)
chr6 (191-269)||(4612253-4612329)
chr6 (1-75)||(4572706-4572785)
chr6 (1-50)||(4587258-4587307)
chr6 (228-269)||(3173520-3173561)
chr6 (232-269)||(4255395-4255432)
chr6 (224-269)||(4258742-4258787)
chr6 (228-269)||(4513549-4513590)
chr6 (189-266)||(4599683-4599758)
chr6 (224-266)||(4623827-4623869)
chr6 (228-269)||(4507428-4507469)
chr6 (228-269)||(4603627-4603668)
chr6 (228-269)||(4618818-4618859)
chr6 (222-266)||(4581534-4581578)
[»] scaffold0475 (1 HSPs)
scaffold0475 (226-269)||(2341-2384)
[»] chr3 (1 HSPs)
chr3 (228-269)||(1282950-1282991)
[»] chr7 (1 HSPs)
chr7 (222-266)||(3088265-3088309)
[»] scaffold0288 (1 HSPs)
scaffold0288 (228-269)||(2021-2062)
[»] scaffold0199 (1 HSPs)
scaffold0199 (228-269)||(1275-1316)
[»] chr8 (2 HSPs)
chr8 (228-269)||(1676038-1676079)
chr8 (226-266)||(20862378-20862418)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 4558910 - 4558642
Alignment:
Q  1 aactttttaatgaaaaattgttttccttctataacaaaaagtggtgacttgacaagtatgtatcaattattgtgttacatattccttagaatttgagttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  4558910 aactttttaatgaaaaattgttttccttctataacaaaaagtggtgacttgataagtatgtatcaattattgtgttacatattacttagaatttgagttt 4558811  T
Q  101 gctttccttgtcttttgtctcttatcttcttttacacaaatccaagaaacattggctttatctttattaaaccattggcttcccttagctcaacattcaa 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4558810 gctttccttgacttttgtctcttatcttcttttacacaaatccaagaaacattggctttatctttattaaaccattggcttcccttagctcaacattcaa 4558711  T
Q  201 acacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggcca 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4558710 acacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggcca 4558642  T

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Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 90 - 269
Target Start/End: Complemental strand, 4572660 - 4572483
Alignment:
Q  90 aatttgagtttgctttccttgtcttttgtctcttatcttcttttacacaaatccaagaaacattggctttatctttattaaaccattggcttcccttagc 189  Q
    ||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| |||| |||||    
T  4572660 aatttgattttgctttccttgtcttttgtctct-atcttcttttccacaaatccaagaaacattggatttatctttattaaaacattggtttcc-ttagc 4572563  T
Q  190 tcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggcca 269  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4572562 tcaacattcaaacacaaaaactcaataatgagtgataaaaaaccacatgctgtgttaatcccatatccagttcaaggcca 4572483  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 156 - 269
Target Start/End: Complemental strand, 4587260 - 4587149
Alignment:
Q  156 ctttatctttattaaaccattggcttcccttagctcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatat 255  Q
    |||||||| |||||||||||||||||||||| |||||| ||||||||||  ||||||| |||||||||||  |||||| |||||||||||||| |||| |    
T  4587260 ctttatctctattaaaccattggcttccctttgctcaaaattcaaacac--aaactcagaaatgagtgattcaaaacctcatgctgtgttaatcccatct 4587163  T
Q  256 ccagttcaaggcca 269  Q
    ||||||||||||||    
T  4587162 ccagttcaaggcca 4587149  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 191 - 269
Target Start/End: Original strand, 4612253 - 4612329
Alignment:
Q  191 caacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggcca 269  Q
    |||||||||||||||||  |||| |||||||||||  |||||||||||| |||||||||||||||||||||||||||||    
T  4612253 caacattcaaacacaaa--ctcagaaatgagtgattcaaaaccacatgcagtgttaattccatatccagttcaaggcca 4612329  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4572785 - 4572706
Alignment:
Q  1 aactttttaatgaaaaattgttttccttctat-----aacaaaaagtggtgacttgacaagtatgtatcaattattgtgt 75  Q
    |||||||||||||||||||||||||||||| |     ||||||||||||||||||||| |||||| ||||||||||||||    
T  4572785 aactttttaatgaaaaattgttttccttctctcacgtaacaaaaagtggtgacttgactagtatgcatcaattattgtgt 4572706  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4587307 - 4587258
Alignment:
Q  1 aactttttaatgaaaaattgttttccttctataacaaaaagtggtgactt 50  Q
    |||||||||||||||||||| ||||||| |||||||||||||||| ||||    
T  4587307 aactttttaatgaaaaattgatttccttttataacaaaaagtggtcactt 4587258  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 3173561 - 3173520
Alignment:
Q  228 aaaaccacatgctgtgttaattccatatccagttcaaggcca 269  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  3173561 aaaaccacatgcagtgttaactccatatccagttcaaggcca 3173520  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 4255395 - 4255432
Alignment:
Q  232 ccacatgctgtgttaattccatatccagttcaaggcca 269  Q
    |||||||||||||| |||||||||||||||||||||||    
T  4255395 ccacatgctgtgttgattccatatccagttcaaggcca 4255432  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 4258742 - 4258787
Alignment:
Q  224 ataaaaaaccacatgctgtgttaattccatatccagttcaaggcca 269  Q
    ||||||| |||||||||||||| ||||||||||||| |||||||||    
T  4258742 ataaaaagccacatgctgtgttgattccatatccagctcaaggcca 4258787  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 4513549 - 4513590
Alignment:
Q  228 aaaaccacatgctgtgttaattccatatccagttcaaggcca 269  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  4513549 aaaaccacatgctgtgttgattccatatccacttcaaggcca 4513590  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 4599758 - 4599683
Alignment:
Q  189 ctcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaagg 266  Q
    ||||||||||||||||  ||||||| ||||||||| |||||||| |||||| || || |||||||  ||| |||||||    
T  4599758 ctcaacattcaaacac--aaactcacaaatgagtggtaaaaaactacatgcagtattgattccattaccaattcaagg 4599683  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 4623869 - 4623827
Alignment:
Q  224 ataaaaaaccacatgctgtgttaattccatatccagttcaagg 266  Q
    ||||||| |||||||||||||| ||| ||||||||||||||||    
T  4623869 ataaaaagccacatgctgtgttgattgcatatccagttcaagg 4623827  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 4507469 - 4507428
Alignment:
Q  228 aaaaccacatgctgtgttaattccatatccagttcaaggcca 269  Q
    |||||||||||||||||| ||||||||||||  |||||||||    
T  4507469 aaaaccacatgctgtgttgattccatatccaactcaaggcca 4507428  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 4603668 - 4603627
Alignment:
Q  228 aaaaccacatgctgtgttaattccatatccagttcaaggcca 269  Q
    ||||| |||||||||||| |||||||||||| ||||||||||    
T  4603668 aaaacaacatgctgtgttgattccatatccacttcaaggcca 4603627  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 4618859 - 4618818
Alignment:
Q  228 aaaaccacatgctgtgttaattccatatccagttcaaggcca 269  Q
    ||||||||||| |||| | |||||||||||||||||||||||    
T  4618859 aaaaccacatgttgtgatgattccatatccagttcaaggcca 4618818  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 4581578 - 4581534
Alignment:
Q  222 tgataaaaaaccacatgctgtgttaattccatatccagttcaagg 266  Q
    ||||||||| |||||||| ||||| |||||||||||| |||||||    
T  4581578 tgataaaaagccacatgcagtgttgattccatatccacttcaagg 4581534  T

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Target: scaffold0475 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 2384 - 2341
Alignment:
Q  226 aaaaaaccacatgctgtgttaattccatatccagttcaaggcca 269  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  2384 aaaaaaccacatgctgtgttgattccatatccagttcaaggcca 2341  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 1282991 - 1282950
Alignment:
Q  228 aaaaccacatgctgtgttaattccatatccagttcaaggcca 269  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  1282991 aaaaccacatgctgtgttgattccatatccagctcaaggcca 1282950  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 3088309 - 3088265
Alignment:
Q  222 tgataaaaaaccacatgctgtgttaattccatatccagttcaagg 266  Q
    ||||||||| |||||||||||||| |||||||||||| |||||||    
T  3088309 tgataaaaagccacatgctgtgttgattccatatccacttcaagg 3088265  T

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Target: scaffold0288 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 2021 - 2062
Alignment:
Q  228 aaaaccacatgctgtgttaattccatatccagttcaaggcca 269  Q
    ||||||||||| |||| | |||||||||||||||||||||||    
T  2021 aaaaccacatgttgtgatgattccatatccagttcaaggcca 2062  T

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Target: scaffold0199 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 1316 - 1275
Alignment:
Q  228 aaaaccacatgctgtgttaattccatatccagttcaaggcca 269  Q
    |||| ||||||||||||| ||||||||||||| |||||||||    
T  1316 aaaatcacatgctgtgttcattccatatccagctcaaggcca 1275  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 1676079 - 1676038
Alignment:
Q  228 aaaaccacatgctgtgttaattccatatccagttcaaggcca 269  Q
    |||| ||||||||||||| ||||||||||||| |||||||||    
T  1676079 aaaatcacatgctgtgttcattccatatccagctcaaggcca 1676038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 20862378 - 20862418
Alignment:
Q  226 aaaaaaccacatgctgtgttaattccatatccagttcaagg 266  Q
    |||||||||||||| ||||||| |||||||||| |||||||    
T  20862378 aaaaaaccacatgcagtgttaactccatatccacttcaagg 20862418  T

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