View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10159_low_36 (Length: 255)

Name: NF10159_low_36
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10159_low_36
NF10159_low_36
[»] chr2 (1 HSPs)
chr2 (1-237)||(36865762-36865998)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 36865762 - 36865998
Alignment:
Q  1 acagtcaatacacattggaatcatgagaaaatattaaaaccaatgttgctggcagcaattggtaaccgtgaaaaactgaaggggtgcatgaagagaggga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36865762 acagtcaatacacattggaatcatgagaaaatattaaaaccaatgttggtggcagcaattggtaaccgtgaaaaactgaaggggtgcaagaagagaggga 36865861  T
Q  101 agataataaaggaaaagagaaggatatgcttactgcattagtaagtatcataacctttgattttgttttgatcttagggttttaaattaagggcaatggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36865862 agataataaaggaaaagagaaggatatgcttactgcattagtaagtatcataacctttgattttgttttgatcttagggttttaaattaagggcaatggt 36865961  T
Q  201 tagcaattaatcataacgtgacttacactctcccttt 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  36865962 tagcaattaatcataacgtgacttacactctcccttt 36865998  T

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