View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_37 (Length: 251)
Name: NF10159_low_37
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 26534591 - 26534342
Alignment:
| Q |
1 |
cccgcgcatccgttcctcgaacaacacccacagcagcttccgtgggaca-------acatcagcggctgctgatactcacattggtgctttgacttcttc |
93 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
26534591 |
cccgcgcatccattcctcgaacaacacccacagcagcttccgtgggactttcctctacatcagcggctgcttatactcacgttggtgctttgacttcttc |
26534492 |
T |
|
| Q |
94 |
cccagatccttctgggtggtaacttccccagcgtgggcatcttaaatgcaacattgatgcctctttttcaagtcagttgaatagatcaggtattggcata |
193 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26534491 |
cccagatccttctaggtggtaacttcctcagcgtgggcatcttaaatgcaacattgatgcctctttctcaagtcagttgaatagatcaggtattggcata |
26534392 |
T |
|
| Q |
194 |
tgtttatgcgacgaagatggggaattttgtgccgccaaaaaccctttgct |
243 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||| |||| |
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| T |
26534391 |
tgtttatccgacgaagatggagaattttgtgccgccaaaaaccctatgct |
26534342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 25827734 - 25827623
Alignment:
| Q |
123 |
agcgtgggcatcttaaatgcaacattgatgcctctttttcaagtcagttgaatagatcaggtattggcatatgtttatgcgacgaagatggggaattttg |
222 |
Q |
| |
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||||||||| ||| |||| ||||||||||||||||| ||| ||||||| |||| | |||||||| | ||||||||| ||||||||||||||| |||||| |
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| T |
25827734 |
agcgtgggcgtctcaaatctaacattgatgcctctttatcacgtcagttaaataaaacaggtattagaatatgtttacgcgacgaagatgggg-attttg |
25827636 |
T |
|
| Q |
223 |
tgccgccaaaaac |
235 |
Q |
| |
|
||| | ||||||| |
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|
| T |
25827635 |
tgctggcaaaaac |
25827623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 235
Target Start/End: Complemental strand, 25472019 - 25471859
Alignment:
| Q |
74 |
attggtgctttgacttcttccccagatccttctgggtggtaacttccccagcgtgggcatcttaaatgcaacattgatgcctctttttcaagtcagttga |
173 |
Q |
| |
|
|||||||||| ||||||| || || | ||||| | ||| || |||| ||||||||| ||| ||||| |||||||||| |||||| ||| || |||| | |
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| T |
25472019 |
attggtgcttcaacttctttcctagcttcttctcgatggcaatttccttagcgtgggcgtctcaaatgtaacattgatgtctctttctcacgttagttaa |
25471920 |
T |
|
| Q |
174 |
atagatcaggtattggcatatgtttatgcgacgaagatggggaattttgtgccgccaaaaac |
235 |
Q |
| |
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||| | || ||||| | || |||| ||| || |||||||||| ||||||||| | ||||||| |
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|
| T |
25471919 |
ataaaacatgtattagaatgtgttcatgtgatgaagatgggg-attttgtgctggcaaaaac |
25471859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 16267422 - 16267463
Alignment:
| Q |
137 |
aaatgcaacattgatgcctctttttcaagtcagttgaataga |
178 |
Q |
| |
|
|||||||||||||||||||| || |||||| ||||||||||| |
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|
| T |
16267422 |
aaatgcaacattgatgcctccttctcaagtgagttgaataga |
16267463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 20244606 - 20244642
Alignment:
| Q |
138 |
aatgcaacattgatgcctctttttcaagtcagttgaa |
174 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| |
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|
| T |
20244606 |
aatgcaacattgatgccactttttcaggtcagttgaa |
20244642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 20248644 - 20248680
Alignment:
| Q |
138 |
aatgcaacattgatgcctctttttcaagtcagttgaa |
174 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| |
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|
| T |
20248644 |
aatgcaacattgatgccactttttcaggtcagttgaa |
20248680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 20264978 - 20265014
Alignment:
| Q |
138 |
aatgcaacattgatgcctctttttcaagtcagttgaa |
174 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| |
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|
| T |
20264978 |
aatgcaacattgatgccgctttttcaggtcagttgaa |
20265014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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