View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_4 (Length: 552)
Name: NF10159_low_4
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 23 - 545
Target Start/End: Complemental strand, 48617069 - 48616536
Alignment:
| Q |
23 |
aacacaacttctgtatggatcccctgcttcaagttcaactcatcatcatatcctaatttaccactcnnnnnnnctaagaatgcctgatccatcttttgtt |
122 |
Q |
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| T |
48617069 |
aacacaacttctgtatggatcccctgcttcaagttcaactcatcatcatatcctaatttaccactcaataaaactaagaatgcctgatccatcttttgtt |
48616970 |
T |
|
| Q |
123 |
gtttcttcattatgagacactgtcacttatttatattcaacttggtgggattttaaaatcgtaattctttttgtggatgaaatcaattaattttcaatat |
222 |
Q |
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| T |
48616969 |
gtttcttcattatgagacactgtcacttatttatattcaacttggtgggattttaaaatcttaattctttttgtggatgaaatcaattaattttcaatat |
48616870 |
T |
|
| Q |
223 |
tttatattaagtttccatatatcttttacatagataactctaatttcttacagtgaaacaaataactctactttgctttcagctaatttttaacttatta |
322 |
Q |
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| T |
48616869 |
tttatattaagtttccatatatcttttacatagataactctaatttcttacagtgaaacaaataactctaatttgctttcagctaatttttaacatatta |
48616770 |
T |
|
| Q |
323 |
ttaaatcaaggaaaacgttgtttatagcgaaaagaaattcgcataatttcatgttcccgatgcct--------tttctctcactatatatat----agtc |
410 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
48616769 |
ttaaatcaaggaaaacgttgtttatagtgaaaagaaattcgcataatttcatgttcccgatgccttcgcgagatttctctcactatatatatagtcagtc |
48616670 |
T |
|
| Q |
411 |
tagcatgacttattctccatattacatggaaaaatttgccttgtcccggctttgaactctctaccttgaatcgcctgacatttgatctactccccagacg |
510 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
48616669 |
tagcatgactaattctccatattacatgggaaaatttgccttgtcccagctttgaactctctaccttgaatcg-ctgacatttgatctactcaccagacg |
48616571 |
T |
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| Q |
511 |
aacaaattgattggcctctttttaaccctttgctt |
545 |
Q |
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| T |
48616570 |
aacaaatcgattggcctctttttaaccctttgctt |
48616536 |
T |
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