View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_40 (Length: 250)
Name: NF10159_low_40
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 9661536 - 9661775
Alignment:
| Q |
1 |
cttgttttaaactttctatcatttcttaagaaccatgtccatacaattccaatacgcatctacatggttcacaatttttcacgtgtaaaattagtttggt |
100 |
Q |
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| T |
9661536 |
cttgttttaaactttctatcatttattaagaaccatgtccatacaattccaatacgcatctacatggttcacaatttttcacgtgtaaaattagtttggt |
9661635 |
T |
|
| Q |
101 |
aaaaattaattgacttttgaaaggtctaataagatttgcatgcaacctgaatagtaatgtttggcttgaaataatatatggagtggcatcttgctattaa |
200 |
Q |
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| T |
9661636 |
aaaaatgaattgacttttgaaaggtctaataagatttgcatgcaacctgaatagtaatgtttggcttgaaataatatatggagtggcatcttgctattaa |
9661735 |
T |
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| Q |
201 |
aaagttcatgcacgttttgtgaaattgtacttaacctttg |
240 |
Q |
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| T |
9661736 |
aaagttcatgcacgttttgtgaaattgtacttaacctttg |
9661775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 9650465 - 9650679
Alignment:
| Q |
1 |
cttgttttaaactttctatcat--ttctt-aagaaccatgtccatacaattccaatacgcatctacatggttcacaatttttcacgtgtaaaattagttt |
97 |
Q |
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|||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9650465 |
cttgttttaaactttctatcatatttcttcaagaaccctgtccatacaattccaatacacatctacatggttcacaatttttcacgtgtaaaattagttt |
9650564 |
T |
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| Q |
98 |
ggtaaaaattaattgacttttgaaaggtctaataagatttgcatgcaacctgaatagtaatgtttggcttgaaataatatatggagtggcatcttgctat |
197 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9650565 |
ggtaaaaatgaattgacttttgaaaggtctaataagatttgcatgcaacctgaacagtaatgtttggcttgaaataatatatggagtgacatcttgctat |
9650664 |
T |
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| Q |
198 |
taaaaagttcatgca |
212 |
Q |
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| T |
9650665 |
taaaaagttcatgca |
9650679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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