View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_41 (Length: 250)
Name: NF10159_low_41
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 15867148 - 15867371
Alignment:
| Q |
15 |
cctgcatatcctttaggttagaaccgcaaacccaactctaattaaacagataaataaacgcgcgcacaaatacaattcttgattacaaagttctaccaat |
114 |
Q |
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| T |
15867148 |
cctgcatatcctttatgttagaaccgcaaacccaactctaaataaacagataaataaaggcgcacacaaatacaattcttgattacaaagttctaccaat |
15867247 |
T |
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| Q |
115 |
tgcttctgtgtctgtgagagcaatgtggcagttgtaaattgtaattttctattatgcaaacatgtttaagatttacatagttcaagatgtgtttaaatcc |
214 |
Q |
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| T |
15867248 |
tgcttctgtgtctgtgagagcaatgtggcagttgtaaattgtaattttctattatgcaaaaatgcttaagatttacatagtgcaagatgtgtttaaatcc |
15867347 |
T |
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| Q |
215 |
tgcgctatgctcgttgcactttca |
238 |
Q |
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| T |
15867348 |
tgcgctacactcgttgcactttca |
15867371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 15860762 - 15860974
Alignment:
| Q |
15 |
cctgcatatcctttaggttagaaccgcaaacccaactctaatt-aaacagataaataaacgcgcgcacaaatacaattcttgattacaaagttctaccaa |
113 |
Q |
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| T |
15860762 |
cctgcatatcctttatgttagaacaacaaacccaactctaaagcaaacagataaattaaagcat--aggaatacaatgcttgattacaaagttctaccaa |
15860859 |
T |
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| Q |
114 |
ttgcttctgtgtctgtgagagcaatgtggcagttgtaaattgtaattttctattatgcaaacatgtttaagatttacatagttcaagatgtgtttaaatc |
213 |
Q |
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| T |
15860860 |
ttgtgtctacgtctctgagagcaatgtggcag-------ttgtaattttctattgtgca---atgcttaagatttacatagtacaagatgtgtttaaata |
15860949 |
T |
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| Q |
214 |
ctgcgctatgctcgttgcactttca |
238 |
Q |
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| T |
15860950 |
cttccctgcgctcgttgcactttca |
15860974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 238
Target Start/End: Original strand, 15846624 - 15846792
Alignment:
| Q |
57 |
taaacagataaataaacgcgcgcacaaatacaattcttgattacaaagttctaccaattgcttctgtgtctgtgagagcaatgtggcagttgtaaattgt |
156 |
Q |
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| T |
15846624 |
taaacagatagataaacgcgc--aagaatgcaatgcttgattacaaagttctaccaattgtgtttacgtctcagagagcaatgtggcag-------ttgt |
15846714 |
T |
|
| Q |
157 |
aattttctattatgcaaacatgtttaagatttacatagttcaagatgtgtttaaatcctgcgctatgctcgttgcactttca |
238 |
Q |
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| T |
15846715 |
aattttctattatgca---atgcttaaga-ttacatagtacaagataagtttaaatacttcgctaagctcgttgctctttca |
15846792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 15853400 - 15853461
Alignment:
| Q |
15 |
cctgcatatcctttaggttagaaccgcaaacccaactct-aattaaacagataaataaacgc |
75 |
Q |
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| T |
15853400 |
cctgcatatcctttatgttagaacagcaaacccaattctaaagtgaacagataaataaacgc |
15853461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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