View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_44 (Length: 248)
Name: NF10159_low_44
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 27262605 - 27262370
Alignment:
| Q |
3 |
aagaaatactgacagtnnnnnnngacaaataagtgcatgaaattttgattttgcttccaaagggggtcaagtagacactaaccatttggcgaaatgagca |
102 |
Q |
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| T |
27262605 |
aagaaatactgacagtaaaaaaagacaaataagtgcatgaaattttgattttgcttccaaagggggtcaagtagacactaaccatttggcgaaatgagca |
27262506 |
T |
|
| Q |
103 |
ccttgctggtagtatgcagctgaacgagaggcaagaccgtctagaccttggcaccatctcatcattggaaccagcaaggggcaccaaaccctattgttca |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27262505 |
tcttgctggtagtatgcagctgaacgagaggcaagaccgtctagaccttggcaccatctcatcattggaaccagcaaggggcaccaaaccctattgttca |
27262406 |
T |
|
| Q |
203 |
tagtcacagaacataaacataagtagacacgtaagt |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
27262405 |
tagtcacagaacataaacataagtagacacgtaagt |
27262370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 21195044 - 21194916
Alignment:
| Q |
77 |
acactaaccatttggcgaaatgagcaccttgctggtagtatgcagctgaacgagaggcaagaccgtctagaccttggcaccat--ctcatcattggaacc |
174 |
Q |
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||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| |
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| T |
21195044 |
acactcaccatttggcgaaacgagcaccttgttggtagtatgcagctgaacgagaggcaagaccgtccagaccttggcaccatgattcatcgttggaacc |
21194945 |
T |
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| Q |
175 |
agcaaggggcaccaaaccctattgttcat |
203 |
Q |
| |
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||| |||||||||| ||||| |||||||| |
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| T |
21194944 |
agctaggggcaccatacccttttgttcat |
21194916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 27250817 - 27250689
Alignment:
| Q |
77 |
acactaaccatttggcgaaatgagcaccttgctggtagtatgcagctgaacgagaggcaagaccgtctagaccttggcaccat--ctcatcattggaacc |
174 |
Q |
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||||| |||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| |
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| T |
27250817 |
acactcaccatttggcaaaacgagcaccttgttggtagtatgcagctgaacgagaggcaagaccgtccagaccttggcaccatgattcatcgttggaacc |
27250718 |
T |
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| Q |
175 |
agcaaggggcaccaaaccctattgttcat |
203 |
Q |
| |
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||| |||||||||| |||||||||||||| |
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| T |
27250717 |
agctaggggcaccagaccctattgttcat |
27250689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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