View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_46 (Length: 242)
Name: NF10159_low_46
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_46 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 14755811 - 14756035
Alignment:
| Q |
1 |
tgctgatgtgtcattctaaggaagctcccaatattttttacttttgttctaagattgacacttgctctaatgcatactctcttttacatattatattann |
100 |
Q |
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| T |
14755811 |
tgctgatgtgtcattctaaggaagctcccaatattttttacttttgttctaagattgacacttgctctaatgcatactctcttttacatattatattatt |
14755910 |
T |
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| Q |
101 |
nnnnncaattcaatttttcattctaattttaaattcccatgcaagttacgaattaactctccattaaatttactctttcaaacaaaaacgccccattaat |
200 |
Q |
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| T |
14755911 |
tttttcaattcaatttttcattctaattttaaattcccatgcaaattacgaattaactctccattaaatttactctttcaaacaaaaacgccccattaat |
14756010 |
T |
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| Q |
201 |
ttgactttatgcatattgcataatt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
14756011 |
ttgactttatgcatattgcataatt |
14756035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 39071665 - 39071578
Alignment:
| Q |
1 |
tgctgatgtgtcattctaaggaagctcccaatattttttacttttgttctaagattgacacttgctctaatgcatactctcttttacat |
89 |
Q |
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|||||||||||| || ||| ||||||| ||| ||||| ||||| |||||||||||||||||||||||| ||| || |||||||||| |
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| T |
39071665 |
tgctgatgtgtccttataacaaagctcctaatttttttgactttcactctaagattgacacttgctctaatccatgct-tcttttacat |
39071578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 17580813 - 17580591
Alignment:
| Q |
1 |
tgctgatgtgtcattctaaggaagctcccaatattttttacttttgttctaagattgacacttgctctaatgcatactctcttttacatattatattann |
100 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17580813 |
tgctgacgtgtccttctaaggaagctcccaatattttttacttttgttttaagattgacacttgctctaatgcatactctcttttacatattat--tatt |
17580716 |
T |
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| Q |
101 |
nnnnncaattcaatttttcattctaattttaaattcccatgcaagttacgaattaactctccattaaatttactctttcaaacaaaaacgccccattaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17580715 |
tttttcaattcaatttttcattctaattttaaattcccatgcaagttacgaattaactctccattaaatttactctttcaaacaaaaactccccattaat |
17580616 |
T |
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| Q |
201 |
ttgactttatgcatattgcataatt |
225 |
Q |
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| T |
17580615 |
ttgactttatgcatattgcataatt |
17580591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 49605 - 49642
Alignment:
| Q |
34 |
ttttttacttttgttctaagattgacacttgctctaat |
71 |
Q |
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| T |
49605 |
tttttaacttttgctctaagattgacacttgctctaat |
49642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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