View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_47 (Length: 241)
Name: NF10159_low_47
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_47 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 9661097 - 9661321
Alignment:
| Q |
18 |
ctatttccttttttctaatgtcctaattgccaagtaaaatatccaaattcaacttcattgttttcaaattcaatgttttaannnnnnn-ctttcaattac |
116 |
Q |
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| T |
9661097 |
ctatttccttttttctaatgtcctaattgccaagtaaaatatccaaattcaacttgattgttttcaaattcaatgttttaattttctttctttcaattac |
9661196 |
T |
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| Q |
117 |
aacaatgatgatcatataaatatccgttcatataaaatgtatttctaaatcaaaacattatactggtatatacacgcaatttaaattttgtaataaaatc |
216 |
Q |
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| T |
9661197 |
aacaatgatgatcatataaatatcggttcgtataaaatgtatttctaaatcaaaatattatactggtatatacacgcaatttaaattttgtaataaaatc |
9661296 |
T |
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| Q |
217 |
atgggaagaaatttttcatattgat |
241 |
Q |
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| T |
9661297 |
atgggaagaaatttttcatattgat |
9661321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 117 - 241
Target Start/End: Original strand, 9650168 - 9650290
Alignment:
| Q |
117 |
aacaatgatgatcatataaatatccgttcatataaaatgtatttctaaatcaaaacattatactggtatatacacgcaatttaaattttgtaataaaatc |
216 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||| | || || |||| ||||| ||||||| |||| ||||| |
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| T |
9650168 |
aacaatgatgatcatataaatatccattcgtataaaatgtatttcaaaatcaaaatatttttttg--ttaaacacacaattcaaattttctaatgaaatc |
9650265 |
T |
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| Q |
217 |
atgggaagaaatttttcatattgat |
241 |
Q |
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| T |
9650266 |
atgtgcagagatttttcatattgat |
9650290 |
T |
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