View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_49 (Length: 241)
Name: NF10159_low_49
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_49 |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: scaffold0043 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 17101 - 17332
Alignment:
| Q |
1 |
tttcaaactcataaattattcagattgaaattctttttagaaaaacactgatctaaattgaaccatgagtaacctactacactataggtattctgagcca |
100 |
Q |
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| T |
17101 |
tttcaaactcataaattattcagattgaaattctttttggaaaaacactgatataaattgaaccatgagtaacctactacactataggtattatgagcca |
17200 |
T |
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| Q |
101 |
tcttatctcacccttcgtataacatgccacctaaaaataaggaaccttt--------aattattcaattattcacttattcaatgcttatttggttgttt |
192 |
Q |
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| T |
17201 |
tcttatctcaccctttgtatcacatgccacctaaaaataaggaacctttcattattcaattattcacttattcacttattcaatgcttatttggttgttt |
17300 |
T |
|
| Q |
193 |
gatat-gtttcgtttcaagtacccactaattc |
223 |
Q |
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| T |
17301 |
gatatagtgtcgtttcaagtacccaataattc |
17332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 175
Target Start/End: Original strand, 16309336 - 16309478
Alignment:
| Q |
35 |
ttttagaaaaacactgatctaaattgaaccatgagtaacctactaca--ctataggtattctgagccatcttatctcacccttcgtataacatgccacct |
132 |
Q |
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| T |
16309336 |
ttttggaaaaacattgatctaaattgcaccatgaataacctactacataccataggtattaggagtcatcttatctcacccttcgtataagatgctacct |
16309435 |
T |
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| Q |
133 |
aaaaataaggaacctttaattattcaattattcacttattcaa |
175 |
Q |
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| T |
16309436 |
aaaaataatgaacctttcattattcaattattcacgtattcaa |
16309478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 175
Target Start/End: Original strand, 18490330 - 18490472
Alignment:
| Q |
35 |
ttttagaaaaacactgatctaaattgaaccatgagtaacctactaca--ctataggtattctgagccatcttatctcacccttcgtataacatgccacct |
132 |
Q |
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| T |
18490330 |
ttttggaaaaacattgatctaaattgcaccatgaataacctactacataccataggtattaggagtcatcttatctcacccttcgtataagatgctacct |
18490429 |
T |
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| Q |
133 |
aaaaataaggaacctttaattattcaattattcacttattcaa |
175 |
Q |
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| T |
18490430 |
aaaaataatgaacctttcattattcaattattcacgtattcaa |
18490472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 16311045 - 16311095
Alignment:
| Q |
174 |
aatgcttatttggttgtttgatat-gtttcgtttcaagtacccactaattc |
223 |
Q |
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| T |
16311045 |
aatgcttatttggttgtttgatatagtgtcgtttcaagtacccactaattc |
16311095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 18487829 - 18487879
Alignment:
| Q |
174 |
aatgcttatttggttgtttgatat-gtttcgtttcaagtacccactaattc |
223 |
Q |
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| T |
18487829 |
aatgcttatttggttgtttgatatagtgtcgtttcaagtacccactaattc |
18487879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 18492039 - 18492089
Alignment:
| Q |
174 |
aatgcttatttggttgtttgatat-gtttcgtttcaagtacccactaattc |
223 |
Q |
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| T |
18492039 |
aatgcttatttggttgtttgatatagtgtcgtttcaagtacccactaattc |
18492089 |
T |
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