View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_50 (Length: 240)
Name: NF10159_low_50
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 26165162 - 26165385
Alignment:
| Q |
1 |
tttttctaatcatgtgtttaagttttagttacattgagcacaagaccccgattgcattttgtttttctatgtttattgttcaactagcccgttactcata |
100 |
Q |
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| T |
26165162 |
tttttctaatcatgtgtttaaattttagttacattgagcacaagaccccgattgcattttgtttttctatgtttattgttcaactagcccgttactcata |
26165261 |
T |
|
| Q |
101 |
actttgtggtgttacttttaacttatgtagttatttaatcatttttggtctgggttttgtaattatattaaattaaattgaactatatgtcaaataatga |
200 |
Q |
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| T |
26165262 |
actttgtggtgttacttttaacttatgtagtcatttaatcatttttggtctgggttatgtaattgcattaaattaaattgaactatatgtcaaatgatga |
26165361 |
T |
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| Q |
201 |
catcttccctttaatgatgataac |
224 |
Q |
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| T |
26165362 |
catcttccctttaatgatgataac |
26165385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 14939369 - 14939460
Alignment:
| Q |
114 |
acttttaacttatgtagttatttaatcatttttggtctgggttttgtaattatattaaattaaattgaactatatgtcaaataatgacatctt |
206 |
Q |
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| T |
14939369 |
acttataacctatgtagtcatt-aatcattattggtcaaggttatgtaatgacttttaattaaattgaactatatgtcaaatgatgacatctt |
14939460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 38990699 - 38990771
Alignment:
| Q |
119 |
taacttatgtagttatttaatcatttttggtctgggttttgtaattatattaaattaaattgaactatatgtc |
191 |
Q |
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| T |
38990699 |
taacttatgtagttatttaatcattattagtcagggttatgtaattgctttaaattaaattgaactatatgtc |
38990771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 34988580 - 34988671
Alignment:
| Q |
114 |
acttttaacttatgtagttatttaatcatttttggtctgggttttgtaattatattaaattaaattgaactatatgtcaaataatgacatctt |
206 |
Q |
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| T |
34988580 |
acttataacctatgtagtcatt-aatcattattggtcaaggttatgtaatgactttaaattaaattgaactatatgtcaaatgatgacatctt |
34988671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 1058455 - 1058368
Alignment:
| Q |
114 |
acttttaacttatgtagttatttaatcatttttggtctgggttttgtaattatattaaattaaattgaactatatgtcaaataatgaca |
202 |
Q |
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| T |
1058455 |
acttataacatatgtagtcatt-aatcattattgatcagggttatgcaatgattttaaattaaattgaactatatgtcaaatgatgaca |
1058368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 34030278 - 34030345
Alignment:
| Q |
135 |
ttaatcatttttggtctgggttttgtaattatattaaattaaattgaactatatgtcaaataatgaca |
202 |
Q |
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| T |
34030278 |
ttaatcattattgatcagggttatgcaatgattttaaattaaattgaactatatgtcaaatgatgaca |
34030345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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