View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10159_low_52 (Length: 235)
Name: NF10159_low_52
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10159_low_52 |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: scaffold0043 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 16780 - 16947
Alignment:
| Q |
1 |
gcccaactagtgagcgagttggagtttttgcatgttaggcaagcctcttcaccaaatatttacagccaattttcctctacttactcgctaatcttccaat |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16780 |
gcccatctagtgagcgagttggagtttttgcatgttaggcaagcctcttcaccaaatatttatagccaattttcctctacttactcgctaatcttccaat |
16879 |
T |
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| Q |
101 |
atgggacattagttgctatatctacatatctgcaaatctcacttcatagtgaagagactaaattacct |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16880 |
atgggacattagttgctatatctacatatctgcaaatctcacttcatagtgaagagactaaattacct |
16947 |
T |
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