View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10159_low_56 (Length: 229)

Name: NF10159_low_56
Description: NF10159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10159_low_56
NF10159_low_56
[»] chr1 (1 HSPs)
chr1 (20-211)||(21077996-21078199)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 21077996 - 21078199
Alignment:
Q  20 catcatcatcacgatcatgaagaaacatttttctcatcgttcttgttacgacaaccataaacaacaacaacaaaagaaagaatatgatcac--------- 110  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||             
T  21077996 catcatcatcacgatcatgaagaaacatttttctcttcgttcttgttacgacaaccataaacaacaacatcaaaagaaagaatatgatcaccatgatgct 21078095  T
Q  111 ---gatgagcagaaaaagaatattggttgtttaatatcaacaatgttcaaatgtgatttgtgccacagaatcttcacctccggcactgcactcggtggcc 207  Q
       ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21078096 actgatgatcagaaaaagaatattggttgttcaatatcaacaatgttcaaatgtgatttgtgccacagaatcttcacctccggcactgcactcggcggcc 21078195  T
Q  208 acaa 211  Q
    ||||    
T  21078196 acaa 21078199  T

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