View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1015_high_5 (Length: 252)
Name: NF1015_high_5
Description: NF1015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1015_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 53767037 - 53767274
Alignment:
| Q |
13 |
aatatggtaaataaggcttgacatcaagaaccggctgttgatg----agaataagaaaataagtataagtccacataaagcatcatgctttcagattcac |
108 |
Q |
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| T |
53767037 |
aatatggtaaataaggcttgacatcaagaaccggctgttgatggatgagaataagaaaataagt------ccacataaagcatcatgctttcagattcac |
53767130 |
T |
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| Q |
109 |
nnnnnnnnncatccaattcatagttaaagcaaataaacaataaccaaaaaggcacataattccagtacatttagcagacgaagcagagattagaaaatgg |
208 |
Q |
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| T |
53767131 |
aaaaaaaaacatccaattcatagttaaagcaaataaacaataaccaaaaaggcacataattccagtacatttagcagaagaagcagagattagaaaatgg |
53767230 |
T |
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| Q |
209 |
aaacttacagttccatcaaccaggtccacaccagaaagcaaaat |
252 |
Q |
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| T |
53767231 |
agacttacagttccatcaaccaggtccacaccagaaagcaaaat |
53767274 |
T |
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