View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1015_low_1 (Length: 485)
Name: NF1015_low_1
Description: NF1015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1015_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 22 - 419
Target Start/End: Original strand, 852492 - 852889
Alignment:
| Q |
22 |
gtcatatgaaatagagattgaagggatatcattgaagaaggcctctcgagctccagctacagtgcctgagtaaacactgaaagggagttagatagaacag |
121 |
Q |
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| T |
852492 |
gtcatatgaaatagagattgaagggatatcattgaagaaggcctctcgagctccagctacagtgcctgagtaaacactgaaagggagttagatagaacag |
852591 |
T |
|
| Q |
122 |
ctgtggaagaataatttctatggtaataactgctgaaacaactttagcaaaaagaaatattgagtagattctaagtggatcatatcaaatttcaaggaaa |
221 |
Q |
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| T |
852592 |
ctgtggaagaataatttctatggtaataactgctgaaacaactttagcaaaaagaaatattgagtagattctaagtgggtcatatcaaatttcaaggaaa |
852691 |
T |
|
| Q |
222 |
tggaatcatcatcatctgttcatagcttaggatgataatcctttgttatctgaaatcaatagaaattttttcaacaggtgtgcttgcaagttactccatt |
321 |
Q |
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| T |
852692 |
tggaatcatcatcatctgttcatagcttaggatgataatcctttgttatctgaaatcaatagaaattttttcaacaggtgtgcttgcaagttactccatt |
852791 |
T |
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| Q |
322 |
tgctatgaaatgcaaaatcatttgtaaaagttctaataagctcttctaaacactacctaaagtctaaaaaaggtggggacttgaggaggaaaatggtg |
419 |
Q |
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| T |
852792 |
tgctatgaaatgcaaaatcatttataaaagttctaataagctcttctaaacactacctaaagtctaaaaaaggtggggacttgaggaggaaaatggtg |
852889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 847555 - 847828
Alignment:
| Q |
17 |
taccagtcatatgaaatagagattgaagggatatcattgaagaaggcctctcgagctccagctacagtgcctgagtaaacactgaaagggagttagata- |
115 |
Q |
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| T |
847555 |
taccagtcatatgaaatggagatagaagggatattgttgaagaaggcctctcgagctccagctacagtgcctgagtaaacactgaaagggaattactaat |
847654 |
T |
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| Q |
116 |
-----gaacagctgtggaagaataatttctatggtaataactgctgaaacaactttagcaaaaagaaatattgagtagattctaagtggatcatatcaaa |
210 |
Q |
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|||||| || | || ||||||| ||||||| ||| ||||| ||| |||||||||||||| || | || || |||| || |||| ||||| |
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| T |
847655 |
tacacaaacagcaacgg-acaaaaatttctgtggtaatgactactgaataaaccttagcaaaaagaaaaatagtataaatcataagagggtcatttcaaa |
847753 |
T |
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| Q |
211 |
tttcaaggaaatggaatcatcatcatctgttcatagcttaggatgataatcctttgttatctgaaatcaatagaa |
285 |
Q |
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| T |
847754 |
tttcgaggaaatgaaatcatcatcgtctcttcattgcttaggatgataatccttcgtcatttgaaataaatagaa |
847828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 47054884 - 47054797
Alignment:
| Q |
13 |
aatataccagtcatatgaaatagagattgaagggatatcattgaagaaggcctctcgagctccagctacagtgcctgagtaaacactg |
100 |
Q |
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| T |
47054884 |
aatataccagtcgtatgaaatggagatagaaggtatatcatagaagaatgcctctcgagctccagcaactgtgcctgagtaaacactg |
47054797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 47064072 - 47063994
Alignment:
| Q |
16 |
ataccagtcatatgaaatagagattgaagggatatcattgaagaaggcctctcgagctccagctacagtgcctgagtaa |
94 |
Q |
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| T |
47064072 |
ataccagtcatatgaaatggagatagaaggtatatcatagaagaatgcctttcaaacttcagcaactgtgcctgagtaa |
47063994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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