View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1015_low_4 (Length: 372)
Name: NF1015_low_4
Description: NF1015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1015_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 27 - 362
Target Start/End: Complemental strand, 5288764 - 5288429
Alignment:
| Q |
27 |
tcaattttgatatcttgtgttctttttaagtgttccatgtcattcattatattttgtcaaggaaaatgtttccattcatttagtatttgttctttttatt |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5288764 |
tcaattttgatatcttgtgttctttttaagtgttccatgtcattcattatattttgtcagggaaaatgtttccattcatttagtatttgttctttttatt |
5288665 |
T |
|
| Q |
127 |
agaagtttggtgtgatcatctatctatttgttgttcttcccaataacaattcatgttggaccaaaccttcaattaaccgtctcgttatcatcgttctcga |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5288664 |
agaagtttggtgtgatcatctatctatttgttgttcttcccaataacaattcatgttggaccaaaccttcaattaaccgtctcgttatcatcgttctcga |
5288565 |
T |
|
| Q |
227 |
tactctcatgtactcaacactcgtcgatcgcaaccaccattaccaatttaccattaattaactgtgttatgctatatttttaggtttgattttgttgctc |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5288564 |
tactctcatgtactcaacactcgtcgatcgcaaccaccattaccaatttacgattaattaactgtgttatgctatatttttaggtttgattttgttgctc |
5288465 |
T |
|
| Q |
327 |
ccagtaccttctttcaaggttagttactgatctctg |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
5288464 |
ccagtaccttctttcaaggttagttactgatctctg |
5288429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 127 - 362
Target Start/End: Original strand, 8034753 - 8034984
Alignment:
| Q |
127 |
agaagtttggtgtgatcatctatctatttgttgttcttcccaataacaattcatgttggaccaaaccttcaattaaccgtctcgttatcatcgttctcga |
226 |
Q |
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| T |
8034753 |
agaagtttggtgtgatcatctatctatttgttgttcttctcc----caattcctgttggaccaaacctttaattaaccgtctcgttaccatcgttcccga |
8034848 |
T |
|
| Q |
227 |
tactctcatgtactcaacactcgtcgatcgcaaccaccattaccaatttaccattaattaactgtgttatgctatatttttaggtttgattttgttgctc |
326 |
Q |
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| |||||| ||| ||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
8034849 |
tgctctcaagtattcaacactcgttgatcacaaccaccattatcaatttacaattaattaactgtgttatgctatgttcttaggtttgattttgttgctc |
8034948 |
T |
|
| Q |
327 |
ccagtaccttctttcaaggttagttactgatctctg |
362 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
8034949 |
ccagtaccttctttcaaggttggttactgatctctg |
8034984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 183 - 352
Target Start/End: Complemental strand, 51380273 - 51380100
Alignment:
| Q |
183 |
tggaccaaaccttcaattaaccgtctcgttatcatcgttctcgatactctcatgtactcaacact----cgtcgatcgca---accaccattaccaattt |
275 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||| |||| | |||||||||||| |||| |||||| |||| |||||||||||| |
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| T |
51380273 |
tggaccaaacctgcaattaaccgtctcgttatcatcgttctcgatgctcttaggtactcaacactcgtccgtccatcgcaactaccagcattaccaattt |
51380174 |
T |
|
| Q |
276 |
accattaattaactgtgttatgctatatttttaggtttgattttgttgctcccagtaccttctttcaaggttagtta |
352 |
Q |
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| T |
51380173 |
tccattaattaac--tttttttctgt-gttttaggtttgattttgttgctcccagtaccttctttcaaggttagtta |
51380100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 42965997 - 42966069
Alignment:
| Q |
54 |
aagtgttccatgtcattcattatattttgtcaaggaaaatgtttccattcatttagtatttgttctttttatt |
126 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| ||| ||||||| |||||||||| ||||||||| |
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| T |
42965997 |
aagtgttccatgtcatttattatattttgtcaagaaaaatattttcattcatctagtatttgtcctttttatt |
42966069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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