View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1015_low_6 (Length: 333)
Name: NF1015_low_6
Description: NF1015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1015_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 137 - 261
Target Start/End: Complemental strand, 39953004 - 39952880
Alignment:
| Q |
137 |
aacaatggccatcaccaacgaaagaataaggatcaccagaaatgaaaaagaataactctgcgaatgnnnnnnnnnnntagttaagttagatgctagcttt |
236 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39953004 |
aacaatggccatcaccaacgaatgaataaggatcaccacaaatgaaaaagaataactctgcgaatgaaaaaaaaaaatagttaagttagatgctagcttt |
39952905 |
T |
|
| Q |
237 |
ctcatcaatatatcactagaataat |
261 |
Q |
| |
|
| |||||||||||||||| |||||| |
|
|
| T |
39952904 |
cacatcaatatatcactaaaataat |
39952880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 39953088 - 39953032
Alignment:
| Q |
86 |
agaaccgactcctttaagaacacccacaatcattgtagttaaagcagaattaacaat |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39953088 |
agaaccgactcctttaagaacacccacaatcattgtagttaaagcagaattaacaat |
39953032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 137 - 261
Target Start/End: Original strand, 50416739 - 50416861
Alignment:
| Q |
137 |
aacaatggccatcaccaacgaaagaataaggatcaccagaaatgaaaaagaataactctgcgaatgnnnnnnnnnnntagttaagttagatgctagcttt |
236 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
50416739 |
aacaatgcccatcaccaacgaaagaataaggatcaccagaaatgaaaaagaataactctgcgaagg--aaaaaaaaatagttaagttagatgctagcttt |
50416836 |
T |
|
| Q |
237 |
ctcatcaatatatcactagaataat |
261 |
Q |
| |
|
| |||||||||| ||||| |||||| |
|
|
| T |
50416837 |
cacatcaatataacactaaaataat |
50416861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 50416656 - 50416711
Alignment:
| Q |
87 |
gaaccgactcctttaagaacacccacaatcattgtagttaaagcagaattaacaat |
142 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
50416656 |
gaaccaactcctttaagaacacccacaatcgttgtagttaaagcagaattaacaat |
50416711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University