View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10160_high_4 (Length: 452)
Name: NF10160_high_4
Description: NF10160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10160_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Original strand, 1079655 - 1080057
Alignment:
| Q |
16 |
agtattattatgcaagcccctaaaccacttgaaaattgtcgggaatttgaatctcaacgttttaccataaagattcccatcataacaatctggagcagtg |
115 |
Q |
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| T |
1079655 |
agtattattatgcaagcccctaaaccacttgaaaattgtcgggaatttgaatctcaacgttttaccataaagattcccatcataacaatctggagcagtg |
1079754 |
T |
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| Q |
116 |
tcgtgatccaaaataattttcgatatctgaaaggtggacatcttatccatccacttgtcacttatggaaatgttgtatcatatgactgttcggccataat |
215 |
Q |
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| T |
1079755 |
tcgtgatccaaaataattttcaatatctgaaaggtggacttcttatccatccgcttgtcacttttggaaatgttgtatcatatgactgttcggccataat |
1079854 |
T |
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| Q |
216 |
gaccgtccaacatcaaccaatagccttctaaacaatgtccatctcttttacggtgtaacaacacaaaatcggaaatgggcggtgatcctctcttgaattt |
315 |
Q |
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| T |
1079855 |
gaccgtccaacatcaaccaatagccttgtaaacattgtccatctcttttacgttgtaacaacacacaatcggaaatgggcggtgattctctcttgaattt |
1079954 |
T |
|
| Q |
316 |
taattttgtcaaatcgacccaattttgagttgttagtgagtacatcatccaacataaaaccgtaagattgtgcatccacgttgtcggatttgtcaaaaga |
415 |
Q |
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| T |
1079955 |
taattttgtcaaatcgacccaattttgagttgttagtgagtacatcatccaacataaaaccgtaagattgtgcatccacgttgtcggatttgtcaaaaga |
1080054 |
T |
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| Q |
416 |
gac |
418 |
Q |
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| T |
1080055 |
gac |
1080057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 54043420 - 54043241
Alignment:
| Q |
17 |
gtattattatgcaagcccctaaacca-cttgaaaattgtcgggaatttgaatctcaacgttttaccataaagattcccatcataac-aatctggagcagt |
114 |
Q |
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||||||||| |||||||| |||| | |||| ||||||||| ||||||||||| | ||||||||||||| |||||||||||||| | |||||||| | || |
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| T |
54043420 |
gtattattacgcaagcccgtaaatctgcttgcaaattgtcgagaatttgaatccccacgttttaccatatagattcccatcatagccaatctggatcggt |
54043321 |
T |
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| Q |
115 |
gtcgtgatccaaaataattttcgatatctgaaaggtggacatcttatccatccacttgtcacttatggaaatgttgtatc |
194 |
Q |
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| T |
54043320 |
gtcgtgatccaaaatccttttcaatagccggaaggtgtacatcttatccatcagcttgtcacttttggaaatgttgtatc |
54043241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 251 - 394
Target Start/End: Complemental strand, 54037413 - 54037269
Alignment:
| Q |
251 |
tgtccatctcttttacggtgtaacaacacaaaatcggaaatgggcggtgatcctctcttgaattttaat-tttgtcaaatcgacccaattttgagttgtt |
349 |
Q |
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|||| ||||| ||||||||||||||| || ||||||| |||||||||||||||||||| ||||| | |||||||| |||||||||| |||| ||||| |
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| T |
54037413 |
tgtctatctcctttacggtgtaacaatgcacgatcggaagtgggcggtgatcctctcttggatttttagctttgtcaagtcgacccaatattgaattgtt |
54037314 |
T |
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| Q |
350 |
agtgagtacatcatccaacataaaaccgtaagattgtgcatccac |
394 |
Q |
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| T |
54037313 |
actgagtacatcatccaacatagactcttaagattgtgcatccac |
54037269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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