View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10160_high_5 (Length: 419)
Name: NF10160_high_5
Description: NF10160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10160_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 28506900 - 28507308
Alignment:
| Q |
1 |
tcacaatcagtgtttcaaaagacttgtcaggtggctcaacaagtcattaacatatttatcttgtctttccatattgacaaacaagtccttcatgttctta |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28506900 |
tcacaatcagtgtttcaaaagacttgtaaggtggctcaacaagttattaacatatttatcttgtctttcaatattgacaaacaagtccttcatgttctta |
28506999 |
T |
|
| Q |
101 |
atattttctctatagatcattccctcttcttcaaccacaatcagcctaattgagtgagcaactgaatcacttgtgaaagacccatctctctcatctctag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28507000 |
atattttctctatagatcattccctcttcttcaaccacaatcagcctaattgagtgagcaaccgaatcacttgtgaaagacccatctctctcatctctag |
28507099 |
T |
|
| Q |
201 |
gcactgagtaccccatcttcttttcctccaacactcttgcatttattccttgatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggc |
300 |
Q |
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| T |
28507100 |
gcactgagtaccccatcttcttttcctccaacactcttgcatttattccttgatctgaaagatacgtcaacaacacaagtggcttctcatgttgaactgc |
28507199 |
T |
|
| Q |
301 |
ctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgctatgtgacctaatatcttcatttgtgggacccaatcagtgcataccactcca |
400 |
Q |
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| T |
28507200 |
ctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgccatgtgacctaatatcttcatttgtgggacccaatcagtgcataccactcca |
28507299 |
T |
|
| Q |
401 |
cgtcctttg |
409 |
Q |
| |
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||||||||| |
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| T |
28507300 |
cgtcctttg |
28507308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 48 - 409
Target Start/End: Original strand, 28494401 - 28494762
Alignment:
| Q |
48 |
taacatatttatcttgtctttccatattgacaaacaagtccttcatgttcttaatattttctctatagatcattccctcttcttcaaccacaatcagcct |
147 |
Q |
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|||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||| || | ||| |
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| T |
28494401 |
taacatatctatcttgtctttcaggattgacaaacaaatccttcatgttcttaatattatccctatagatccttccctcttcttcaaccataactaacct |
28494500 |
T |
|
| Q |
148 |
aattgagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttatt |
247 |
Q |
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||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |
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| T |
28494501 |
aatcgagtgagccaccatatcacttgtgaaagacccatctctctcatctctaggcactgagtatcccatcttcttttcttccaacattcttgcatttatt |
28494600 |
T |
|
| Q |
248 |
ccttgatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactg |
347 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28494601 |
ccttgatctgcaagacacgttaacaacacaagtggcttctcatgttgaactgcttctaccaccgatgtccaccctgcatgagtcaagaatccaccaactg |
28494700 |
T |
|
| Q |
348 |
ctatgtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgtcctttg |
409 |
Q |
| |
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| | ||| | ||||||||||||||||||| |||| ||||||||||||||||||||| ||||| |
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|
| T |
28494701 |
ccacgtggcttaatatcttcatttgtggggcccattcagtgcataccactccacgtactttg |
28494762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 52 - 409
Target Start/End: Original strand, 28491086 - 28491443
Alignment:
| Q |
52 |
atatttatcttgtctttccatattgacaaacaagtccttcatgttcttaatattttctctatagatcattccctcttcttcaaccacaatcagcctaatt |
151 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||||||||| | ||||||||||| ||||| ||| | || |||||||||| || || || |||||| |
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| T |
28491086 |
atatctatcttgtctttcaatattgacaaacaagtccttcacctctttaatattttccctatatatcctcccttcttcttcaagcataactagtctaatt |
28491185 |
T |
|
| Q |
152 |
gagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattcctt |
251 |
Q |
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| | |||| ||||| ||||||||||| ||||||||| ||||||||||||||| | ||| ||||||||||||| |||||||| | ||||||||||| | |
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| T |
28491186 |
gtgcgagccactgagtcacttgtgaatgacccatcttgctcatctctaggcaccgtgtatgccatcttcttttcttccaacaccttcgcatttattccct |
28491285 |
T |
|
| Q |
252 |
gatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgctat |
351 |
Q |
| |
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| ||| ||||| | |||| |||||||||||||||||| || ||||| || || ||||| |||||||| ||||| |||| ||||| |||||| ||| || |
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| T |
28491286 |
ggtctacaagaaatgtcatcaacacaagtggcttctcgttttgaactgcttccaccactgatgtccaacctgcgtgagaaaagaacacaccaattgccat |
28491385 |
T |
|
| Q |
352 |
gtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgtcctttg |
409 |
Q |
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||| ||||||||||||||||| || |||||||||||||||| ||||| || |||||| |
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| T |
28491386 |
gtgccctaatatcttcatttgcggagcccaatcagtgcatacaactccgcgccctttg |
28491443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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