View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10160_low_1 (Length: 827)
Name: NF10160_low_1
Description: NF10160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10160_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 1194083 - 1193790
Alignment:
| Q |
20 |
aaaatatttacaaa-gtcatagtgcctttattgaaagagcaccaacaaaaacagaaaataaattaacaaggatgccaactatgtattttctaaatttttg |
118 |
Q |
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| T |
1194083 |
aaaatatttacaaaagtcatattgcctttattgaaagagcaccaacaaaaacagaaaataaattaacaaggatgccaactatgtattttctgaatttttg |
1193984 |
T |
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| Q |
119 |
g-ttatatatcgagaagtattaaattatttccattttgccatgaaaattttgcaaaattcatgcgcaattggacacatatccaacttgaaaaatataaaa |
217 |
Q |
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| T |
1193983 |
gtttatatatcgagaagtattaaattatttccattttgccatgaaaattttgc--aattcatgcgcaattggacacatatccaacatgaaaaatataaaa |
1193886 |
T |
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| Q |
218 |
tttgagnnnnnnncctttcaaatttgtcagctaaccaccaataattacaataaaccacaaaagaaacaggataatgcaagatttcttagtttacta |
313 |
Q |
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| T |
1193885 |
tttgagtttttttcctttcaaatttgtcagctaaccaccaataattacaataaaccacaaaagaaacaggataatgcaagatttcttagattacta |
1193790 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 654 - 696
Target Start/End: Original strand, 45635099 - 45635141
Alignment:
| Q |
654 |
gttgcaagagttggcagtgccatgttgatggttaaaaagaagc |
696 |
Q |
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| T |
45635099 |
gttgcaagggttggcagtgccatgttgattgctaaaaagaagc |
45635141 |
T |
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