View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10160_low_15 (Length: 279)
Name: NF10160_low_15
Description: NF10160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10160_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 31922837 - 31923007
Alignment:
| Q |
1 |
tttcaacaaaatctagtcctatgcacgtccttcaagtaaagattaagcatttccttnnnnnnnncacaatagaagaactgaacgtgcttctttcaactaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
31922837 |
tttcaacaaaatctagtcctatgcacgtccttcaagtaaagattaagcatttcct-aaaaaaaacaaaatagaagaactgaacgtgcttctttcaactaa |
31922935 |
T |
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| Q |
101 |
gctgagagttctacgccatgtccatgtgatttatgtctcgtttcttgagcttcagattcattagtcagatac |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31922936 |
gctgagagttctacgccatgtccatgtgatttatgtctcgtttcttgagcttcagattcattagtcagatac |
31923007 |
T |
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Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 31923064 - 31923139
Alignment:
| Q |
191 |
cacacacctccttctgtcttcctctctgtatccagtgagttattccaaactatgtccttcttttattattattcct |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31923064 |
cacacacctccttctgtcttcctctctgtatccagtgagttattccaaactatgtccttcttttattattattcct |
31923139 |
T |
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