View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10160_low_17 (Length: 226)
Name: NF10160_low_17
Description: NF10160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10160_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 8584935 - 8585130
Alignment:
| Q |
18 |
ctgctgagattcgtgatcctttcagaaatgttagaatctggttgggaacttacaacagtgctgaagaagcttctcaagcttatgaatccaaaaggcttca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8584935 |
ctgctgagattcgtgatcctttcagaaatgttagaatctggttgggaacttacaacagtgctgaagaagcttctcaagcttatgaatccaaaaggcttca |
8585034 |
T |
|
| Q |
118 |
ttttgagcttaaatttcaggcaatggaggcaatcaaaaagggttccgcttctgcagcagcccctcgacttgctgcattgaacaaaaactcctatgc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8585035 |
ttttgagcttaaatttcaggcaatggaggcaatcaaaaagggctccgcttctgcagcagcccctcgacttgctgcattgaacaaaaactcttatgc |
8585130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 8601610 - 8601724
Alignment:
| Q |
32 |
gatcctttcagaaatgttagaatctggttgggaacttacaacagtgctgaagaagcttctcaagcttatgaatccaaaaggcttcattttgagcttaaat |
131 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
8601610 |
gatcctttcaagaatgctagaatctggttgggaactttcaatagtgctgaagaagcttctcaagcttatgaatccaaaaagcttcaatttgaacttaaat |
8601709 |
T |
|
| Q |
132 |
ttcaggcaatggagg |
146 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
8601710 |
ctcatgcaatggagg |
8601724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 41748018 - 41748050
Alignment:
| Q |
56 |
tggttgggaacttacaacagtgctgaagaagct |
88 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
41748018 |
tggttgggaacttacaacactgctgaagaagct |
41748050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 47424901 - 47425000
Alignment:
| Q |
18 |
ctgctgagattcgtgatcctttcagaaatgttagaatctggttgggaacttacaacagtgctgaagaagcttctcaagcttatgaatccaaaaggcttca |
117 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||||||| ||||||||||||||| | | | ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47424901 |
ctgctgagattcgtaatcctttaacaaatgttagaatttggttgggaacttacgataccgaagaagaagcttctcaagcttatgaatccgaaaggcttca |
47425000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 50102290 - 50102191
Alignment:
| Q |
18 |
ctgctgagattcgtgatcctttcagaaatgttagaatctggttgggaacttacaacagtgctgaagaagcttctcaagcttatgaatccaaaaggcttca |
117 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||| | ||||||||||||||| | | || ||||| ||||||||||||| |||||| ||||||||||| |
|
|
| T |
50102290 |
ctgctgagattcgtaatccttatacaaatgttagattttggttgggaacttacgataccgccgaagatgcttctcaagcttgtgaatctaaaaggcttca |
50102191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University