View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10160_low_2 (Length: 630)

Name: NF10160_low_2
Description: NF10160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10160_low_2
NF10160_low_2
[»] scaffold0197 (2 HSPs)
scaffold0197 (58-613)||(30353-30913)
scaffold0197 (13-60)||(28316-28363)
[»] chr7 (4 HSPs)
chr7 (210-613)||(21317073-21317475)
chr7 (13-180)||(21316816-21316983)
chr7 (13-141)||(21314031-21314159)
chr7 (458-610)||(3930191-3930343)
[»] chr2 (1 HSPs)
chr2 (454-613)||(13576090-13576249)
[»] chr8 (5 HSPs)
chr8 (457-610)||(43479904-43480057)
chr8 (459-577)||(38799242-38799360)
chr8 (459-577)||(38822157-38822275)
chr8 (458-598)||(26591914-26592054)
chr8 (458-610)||(25865446-25865598)
[»] chr5 (4 HSPs)
chr5 (460-610)||(9866888-9867038)
chr5 (459-610)||(12531239-12531390)
chr5 (459-610)||(12547229-12547380)
chr5 (450-579)||(9894390-9894516)
[»] chr4 (2 HSPs)
chr4 (458-613)||(24860292-24860447)
chr4 (458-598)||(34748501-34748641)


Alignment Details
Target: scaffold0197 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 58 - 613
Target Start/End: Original strand, 30353 - 30913
Alignment:
Q  58 taaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagttta-----cgatattgcgcttgagtcttattgaaaagaatcatatgcaaa 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |   |||     | ||||||||||||||||||||||||||||||||||||||||    
T  30353 taaatgaatgaggtgaggacaagtgaagtagttaacagtatcattcattcttatcaccccatattgcgcttgagtcttattgaaaagaatcatatgcaaa 30452  T
Q  153 tgtcgtaatgcaattccgagatatctatnnnnnnnnnnnnnnnnn-ttagagataccttattggttggtttcacatgccacggatcccgatcctatcacc 251  Q
    ||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30453 tgtcgtaatgcaattccgagatatctataaaaaaaaaaaaaaaaaattagagataccttattggttggtttcacatgccacggatcccgatcctatcacc 30552  T
Q  252 cttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccccctttcaccttctcaaattttcccaattcccgcannnnnnnc 351  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  30553 cttcctgcaaagacgcacaaccgttgataactatttccatcaacggtcaccatctccccctttcaccttctcaaattttcccaattcccgcatttttttc 30652  T
Q  352 ttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatcccaataacatctcaaaatattttctttctcttcaatttcttttc 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30653 ttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatcccaataacatctcaaa-tattttctttctcttcaatttcttttc 30751  T
Q  452 aatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccg 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30752 aatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccgcacggaaatcagctccg 30851  T
Q  552 gcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaat 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30852 gcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaat 30913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 28316 - 28363
Alignment:
Q  13 agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaa 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28316 agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaa 28363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 210 - 613
Target Start/End: Original strand, 21317073 - 21317475
Alignment:
Q  210 tattggttggtttcacatgccacggatcccgatcctatcacccttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21317073 tattggttggtttcacatgccacggatcccgatcctatcacccttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccc 21317172  T
Q  310 cctttcaccttctcaaattttcccaattcccgcannnnnnncttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatccc 409  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21317173 cctttcaccttctcaaattttcccaattcccgcatttttttcttcaatcttctccgccctataaaacacccaaaacacttcttccaacatccatcatccc 21317272  T
Q  410 aataacatctcaaaatattttctttctcttcaatttcttttcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagcccca 509  Q
    |||||||||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21317273 aataacatctcaaa-tattttctttctctcagttttcttttcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagcccca 21317371  T
Q  510 cgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtg 609  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21317372 cgcaaacaactcgccaccaaagccgcacggaaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtg 21317471  T
Q  610 aaat 613  Q
    ||||    
T  21317472 aaat 21317475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 21316816 - 21316983
Alignment:
Q  13 agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttacg 112  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  21316816 agcagagacaaacctagggatgtcaaagtgaatggaacagataagtaaatgaatgaggtgaggacaagtgaattagttaacagtatcatgaaagtttatg 21316915  T
Q  113 atattgcgcttgagtcttattgaaaagaatcatatgcaaatgtcgtaatgcaattccgagatatctat 180  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21316916 atattgcgctcgagtcttattgaaaagaatcatatacaaatgtcgtaatgcaattccgagatatctat 21316983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 21314031 - 21314159
Alignment:
Q  13 agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttacg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  21314031 agcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttatg 21314130  T
Q  113 atattgcgcttgagtcttattgaaaagaa 141  Q
    |||||||||||||||||||||||||||||    
T  21314131 atattgcgcttgagtcttattgaaaagaa 21314159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 458 - 610
Target Start/End: Complemental strand, 3930343 - 3930191
Alignment:
Q  458 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc 557  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||| | |||||||| ||||| |||    
T  3930343 aatggcacgtaccaaacaaacagcacgaaaatccaccggaggaaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaacc 3930244  T
Q  558 ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtga 610  Q
    || || || ||||| |||||| | |||||||| ||||| || || ||||||||    
T  3930243 ggtggtgtaaagaaaccacacagattccgtccaggaacagtcgcacttcgtga 3930191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 454 - 613
Target Start/End: Original strand, 13576090 - 13576249
Alignment:
Q  454 tcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggc 553  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||    
T  13576090 tcaaaatggcacgtaccaaacaaacagcccgcaaatccaccggcggaaaagcaccacgcaaacaactcgccacaaaagccgctcggaaatccgctccggc 13576189  T
Q  554 gaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaat 613  Q
     ||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||    
T  13576190 caccggaggagtgaagaagccacatcgtttccgtcctggaaccgtcgctcttcgtgaaat 13576249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 9e-41; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 457 - 610
Target Start/End: Complemental strand, 43480057 - 43479904
Alignment:
Q  457 aaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgac 556  Q
    ||||||| |||||||||||||| || |||||||||||||| || ||||| ||| | |||||||||||||| |||||||| ||||||||||||||||| ||    
T  43480057 aaatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccgctcggaaatcagctccggccac 43479958  T
Q  557 cggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtga 610  Q
    |||||||||||||||||||||| | |||||||| ||||| || || ||||||||    
T  43479957 cggaggagtgaagaagccacacagattccgtcctggaactgttgctcttcgtga 43479904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 459 - 577
Target Start/End: Original strand, 38799242 - 38799360
Alignment:
Q  459 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg 558  Q
    |||||||||||||| |||||||| ||||||||||||||||| || || || || || || |||||||| || ||||| ||||||||||||||||||||||    
T  38799242 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg 38799341  T
Q  559 gaggagtgaagaagccaca 577  Q
    |||||||||||||||||||    
T  38799342 gaggagtgaagaagccaca 38799360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 459 - 577
Target Start/End: Complemental strand, 38822275 - 38822157
Alignment:
Q  459 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg 558  Q
    |||||||||||||| |||||||| ||||||||||||||||| || || || || || || |||||||| || ||||| ||||||||||||||||||||||    
T  38822275 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg 38822176  T
Q  559 gaggagtgaagaagccaca 577  Q
    |||||||||||||||||||    
T  38822175 gaggagtgaagaagccaca 38822157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 458 - 598
Target Start/End: Original strand, 26591914 - 26592054
Alignment:
Q  458 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc 557  Q
    |||||||||||| || ||||| |||||||| ||||||||||| ||||| ||| | || || ||||| || |||||||| |||||||| ||||||||||||    
T  26591914 aatggcacgtactaagcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgcaacaaaagccgctcggaaatccgctccggcgacc 26592013  T
Q  558 ggaggagtgaagaagccacaccgtttccgtcccggaaccgt 598  Q
    || |||||||||||||||||||||||| | || ||||||||    
T  26592014 ggcggagtgaagaagccacaccgtttcaggccaggaaccgt 26592054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 458 - 610
Target Start/End: Original strand, 25865446 - 25865598
Alignment:
Q  458 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc 557  Q
    |||||| ||||| || ||||| || ||||||||||||||||| || || ||| | || |||||||| || ||||| ||| ||||||| |||||  | |||    
T  25865446 aatggctcgtacgaagcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgcgaccaaagctgcaaggaaatctgctccaaccacc 25865545  T
Q  558 ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtga 610  Q
    || |||||||||||||| || ||||  ||||| |||||||| || ||||||||    
T  25865546 ggcggagtgaagaagcctcatcgttatcgtcctggaaccgttgctcttcgtga 25865598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 460 - 610
Target Start/End: Complemental strand, 9867038 - 9866888
Alignment:
Q  460 tggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccgg 559  Q
    ||||| ||||||||||||| || ||||||||||||||||| ||||| ||| | ||  | || ||||| ||||| || ||||||||||||||||| || ||    
T  9867038 tggcatgtaccaaacaaacggctcgcaaatccaccggcggtaaagcaccatgaaagaagctggccacaaaagctgctcggaaatcagctccggcaacggg 9866939  T
Q  560 aggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtga 610  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  9866938 aggagtgaagaagccacaccgtttccgtcctggaaccgttgcgcttcgtga 9866888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 459 - 610
Target Start/End: Original strand, 12531239 - 12531390
Alignment:
Q  459 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg 558  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||| ||| | || || || ||||||||||| || |||||||| |||||||| ||||    
T  12531239 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccg 12531338  T
Q  559 gaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtga 610  Q
    ||||||| |||||||||||| | |||||||| ||||| || || ||||||||    
T  12531339 gaggagtcaagaagccacacagattccgtccaggaactgttgcacttcgtga 12531390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 459 - 610
Target Start/End: Complemental strand, 12547380 - 12547229
Alignment:
Q  459 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg 558  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||| ||| | || || || ||||||||||| || |||||||| |||||||| ||||    
T  12547380 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccg 12547281  T
Q  559 gaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtga 610  Q
    ||||||| |||||||||||| | |||||||| ||||| || || ||||||||    
T  12547280 gaggagtcaagaagccacacagattccgtccaggaactgttgcacttcgtga 12547229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 579
Target Start/End: Original strand, 9894390 - 9894516
Alignment:
Q  450 tcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctc 549  Q
    |||||||  |||||| ||||||| ||||||||||||||    || ||||| ||||| ||||| || || || ||||| |||||||| || ||||||||||    
T  9894390 tcaatcaccatggcaggtaccaagcaaacagcacgcaat---actggcggcaaagcaccacgaaagcagcttgccaccaaagccgctcgaaaatcagctc 9894486  T
Q  550 cggcgaccggaggagtgaagaagccacacc 579  Q
     |||  |||||  |||||||||||||||||    
T  9894487 tggcagccggaacagtgaagaagccacacc 9894516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 458 - 613
Target Start/End: Original strand, 24860292 - 24860447
Alignment:
Q  458 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc 557  Q
    |||||| ||||| || |||||||| |||||||||||||| |||||||| ||| | || || || || || |||||||| |||||||| ||||| || |||    
T  24860292 aatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccacc 24860391  T
Q  558 ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaat 613  Q
    || ||||||||||| || ||||||||||||||||||||||| || ||||| |||||    
T  24860392 ggcggagtgaagaaacctcaccgtttccgtcccggaaccgttgcacttcgcgaaat 24860447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 458 - 598
Target Start/End: Original strand, 34748501 - 34748641
Alignment:
Q  458 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc 557  Q
    ||||||||||||||| ||||| || ||||||||||| || || ||||| ||| | || ||||| ||||| |||||||| || ||||| |||||||| |||    
T  34748501 aatggcacgtaccaagcaaaccgctcgcaaatccactggaggtaaagctccaaggaagcaactagccacaaaagccgctcgcaaatctgctccggccacc 34748600  T
Q  558 ggaggagtgaagaagccacaccgtttccgtcccggaaccgt 598  Q
    || ||||||||||| || ||||||||| | || ||||||||    
T  34748601 ggtggagtgaagaaacctcaccgtttcagaccaggaaccgt 34748641  T

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