View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10160_low_3 (Length: 516)
Name: NF10160_low_3
Description: NF10160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10160_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 38 - 468
Target Start/End: Original strand, 37596240 - 37596688
Alignment:
| Q |
38 |
catttaaaaagttgttggtttaaatgtgattggttaggttagtctcacatcgattatgaaatggttaaatgtttaaagtgattgaatgaagatgtagttt |
137 |
Q |
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| T |
37596240 |
catttaaaaagttgttggtttaaatgtgattggtcaggttagtctcacgtcgattatgaaatggttaaatatttaaagtgattgaatgaagatgtagttt |
37596339 |
T |
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| Q |
138 |
tccaatctcttatatcatgtttgtttgtgtggtggtaatagcgtagacgcgcgttgaatgagaagccgcgctttataactctattttttagagagcgaaa |
237 |
Q |
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| T |
37596340 |
tctgatcttttatatcatgtttgtttgtgtggtggtaatagcgtagacgcgcgttgaatgagaagccgcgctttataactctattttttagagagcgaaa |
37596439 |
T |
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| Q |
238 |
atacaaatttggccgcattttcaaacaagtcattagtcgtcatggtcatggagtgagattttggtatcaaatgtctttctttagtgtatccaaacaatcc |
337 |
Q |
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| T |
37596440 |
atacaaacttgaccgcattttcaaacaagtcattagtcgtcatggtcatggagtgagattttggtatcaaatgtctttctttagtgtatccaaacaatcc |
37596539 |
T |
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| Q |
338 |
ctcctctcccttacattaaaatccca------------------cttggagatccataggtgacactccctaacttttctataaatatcatattatgtgt |
419 |
Q |
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| T |
37596540 |
ctcctctcccttacattaaaatctcacttggagatccagatctccttggagatccataggtgacactccctaacttttctataaatatcatattatgcgt |
37596639 |
T |
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| Q |
420 |
tttatttcacataatttctggttggcgcagcggatagtcattcttctaa |
468 |
Q |
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| T |
37596640 |
gttatttcacataatttttggttggcgcagtggatagtcattcttctaa |
37596688 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 387 - 463
Target Start/End: Complemental strand, 5232516 - 5232440
Alignment:
| Q |
387 |
ccctaacttttctataaatatcatattatgtgttttatttcacataatttctggttggcgcagcggatagtcattct |
463 |
Q |
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|||||||||||||||||||| ||| ||||| || ||||||| |||| |||||||||||||||| |||| || ||||| |
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| T |
5232516 |
ccctaacttttctataaataccatgttatgcgtattatttcgcatagtttctggttggcgcagtggatggttattct |
5232440 |
T |
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