View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10160_low_5 (Length: 459)
Name: NF10160_low_5
Description: NF10160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10160_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 15 - 455
Target Start/End: Complemental strand, 43417160 - 43416718
Alignment:
| Q |
15 |
ggacatcattgtgtactatgggtgcttctgtattcaggttggctatgcatactgttgcactgcatgtagaattgtcatggcacttacagcctaggacctg |
114 |
Q |
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| T |
43417160 |
ggacagcattgtgtactatgggtgcttctgtattcaggttggctatgcatactgttgcactgcatgtagaattgtcatggcacttacagcctaggacctg |
43417061 |
T |
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| Q |
115 |
agtgtagcatttatatttgaccaatatgtgacatgtattatgggatattatttaagttaatcatgtatgccaacaaattaattagtcagcaacaagtcaa |
214 |
Q |
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| T |
43417060 |
agtgtagcatttatatttgaccaatatgtgacatgtattatgggatattatttaagttaatcatgtatgccaacaaattaattagtcagcaacaagtcaa |
43416961 |
T |
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| Q |
215 |
aatataaatggttcacgaagtttatttgaaaaccttattattattgcctaaactaaaggaatggtaagagtacaatttttcgtaggatgaattataactc |
314 |
Q |
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| T |
43416960 |
aatataaatggttcacgaagtttatttgaaaaccttattattattgcctaaactaaaggaatggtaagagtacaatttttcgtaggatgaattataactc |
43416861 |
T |
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| Q |
315 |
attatggtaaattgatttcaacgg--ggggtcttactattggtgtgtgtctacatattgatttgttgacccttttctttttacttggtctggcagtggaa |
412 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43416860 |
attatggtaaattgatttcaacggggggggtcttactattggtgtgtgtctacatattgatttgttgacccttttctttttacttggtctggcagtggaa |
43416761 |
T |
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| Q |
413 |
tcacacttacaaaattagttggagttctggtcctttgcttctc |
455 |
Q |
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| T |
43416760 |
tcacacttacaaaattagttggagttctggtcctttgcttctc |
43416718 |
T |
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