View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10160_low_9 (Length: 397)

Name: NF10160_low_9
Description: NF10160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10160_low_9
NF10160_low_9
[»] chr8 (12 HSPs)
chr8 (128-384)||(3413222-3413478)
chr8 (16-80)||(3413096-3413160)
chr8 (16-76)||(39453220-39453280)
chr8 (16-80)||(35067264-35067328)
chr8 (16-80)||(67064-67128)
chr8 (16-76)||(45405639-45405699)
chr8 (16-66)||(41639701-41639751)
chr8 (16-76)||(6440189-6440249)
chr8 (16-80)||(42786561-42786625)
chr8 (16-75)||(5574364-5574423)
chr8 (16-80)||(25830149-25830213)
chr8 (16-80)||(33539509-33539573)
[»] chr2 (10 HSPs)
chr2 (16-80)||(21738521-21738585)
chr2 (16-66)||(7084618-7084668)
chr2 (16-76)||(12070955-12071015)
chr2 (16-66)||(26290754-26290804)
chr2 (16-76)||(14328489-14328549)
chr2 (16-79)||(4657406-4657469)
chr2 (16-80)||(19843588-19843652)
chr2 (16-75)||(40357990-40358049)
chr2 (18-66)||(39309527-39309575)
chr2 (16-80)||(45420239-45420303)
[»] chr4 (10 HSPs)
chr4 (18-80)||(34757814-34757876)
chr4 (18-80)||(34759088-34759150)
chr4 (16-76)||(15522462-15522522)
chr4 (16-80)||(47015109-47015173)
chr4 (18-76)||(31468894-31468952)
chr4 (25-76)||(31574852-31574903)
chr4 (16-79)||(46665098-46665161)
chr4 (16-80)||(50980694-50980758)
chr4 (16-66)||(16019594-16019644)
chr4 (16-76)||(193640-193700)
[»] scaffold0662 (1 HSPs)
scaffold0662 (16-80)||(1248-1312)
[»] chr7 (7 HSPs)
chr7 (16-80)||(35822878-35822942)
chr7 (16-76)||(41430055-41430115)
chr7 (16-76)||(42584910-42584970)
chr7 (16-80)||(44496706-44496770)
chr7 (16-76)||(36352487-36352548)
chr7 (16-76)||(34507109-34507169)
chr7 (40-80)||(48145628-48145668)
[»] chr1 (10 HSPs)
chr1 (16-75)||(30519528-30519587)
chr1 (16-66)||(29359861-29359911)
chr1 (16-80)||(49020309-49020373)
chr1 (16-80)||(12999726-12999790)
chr1 (16-76)||(29877405-29877465)
chr1 (16-76)||(30973660-30973720)
chr1 (16-66)||(49446697-49446747)
chr1 (16-76)||(30745094-30745154)
chr1 (16-76)||(30766545-30766605)
chr1 (16-80)||(34817948-34818012)
[»] chr5 (8 HSPs)
chr5 (18-80)||(16690603-16690665)
chr5 (16-66)||(26686996-26687046)
chr5 (16-66)||(26956727-26956777)
chr5 (16-66)||(34940751-34940801)
chr5 (16-80)||(9168071-9168134)
chr5 (16-76)||(14321858-14321918)
chr5 (16-80)||(38493729-38493793)
chr5 (16-76)||(6758693-6758754)
[»] chr3 (13 HSPs)
chr3 (16-66)||(54099260-54099310)
chr3 (16-80)||(1436920-1436984)
chr3 (18-66)||(36755956-36756004)
chr3 (16-80)||(48944614-48944678)
chr3 (16-80)||(51698962-51699026)
chr3 (13-80)||(29781001-29781068)
chr3 (18-76)||(26452628-26452686)
chr3 (16-66)||(43720496-43720546)
chr3 (16-80)||(23868882-23868946)
chr3 (16-80)||(49761090-49761154)
chr3 (16-75)||(52100369-52100428)
chr3 (43-76)||(658736-658769)
chr3 (16-80)||(52485576-52485640)
[»] chr6 (3 HSPs)
chr6 (16-77)||(33651127-33651188)
chr6 (16-76)||(1376474-1376534)
chr6 (16-76)||(1384222-1384282)
[»] scaffold0053 (1 HSPs)
scaffold0053 (16-80)||(12601-12665)


Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 128 - 384
Target Start/End: Original strand, 3413222 - 3413478
Alignment:
Q  128 tgttaggaaatggttgcacaaatatatttctctattacatatgtgtactttcccaacccctaagacactcctttctagaagatcactttcgacttgatca 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3413222 tgttaggaaatggttgcacaaatatatttctctattacatatgtgtactttcccaacccctaagacactcctttctagaagatcactttcgacttgatca 3413321  T
Q  228 taatgtaacaacccattttgcttccatgtactgaaatttaatttgattgtgaatgctacaatgtctgaaaaatatatcagctcatcattattcagtcata 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3413322 taatgtaacaacccattttgcttccatgtactgaaatttaatttgattgtgaatgctacaatgtctgaaaaatatatcagctcatcattattcagtcata 3413421  T
Q  328 aatcatgtaagagtattaagttatctcttttttggataaaatccacatgaatgatgt 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3413422 aatcatgtaagagtattaagttatctcttttttggataaaatccacatgaatgatgt 3413478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 3413096 - 3413160
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3413096 acatcaatttggttgacaacaacattgacagtcatatttttacaaagaaaatcatgtattggcac 3413160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 39453220 - 39453280
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  39453220 acatcaatttgattgacaaccacattgacaatcatatttttacaaagaaaattatgtattg 39453280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 35067328 - 35067264
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| |||||||| |||||||||| |||||||||||||||||||  |||| |||||||    
T  35067328 acatcaatttggttgacaaccacattgacaaccatatttttacaaagaaaagtatgtgttggcac 35067264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 67064 - 67128
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    |||| |||||| |||||||| | || ||||| || ||||||||||||||||||||||||||||||    
T  67064 acattaatttgcttgacaaccaaatagacaaccacatttttacaaagaaaatcatgtattggcac 67128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 45405699 - 45405639
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    |||||||| ||||||||||| |||| |||||  |||||||||||||||||||||| |||||    
T  45405699 acatcaatgtgattgacaaccacatggacaactatatttttacaaagaaaatcatatattg 45405639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 41639701 - 41639751
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaa 66  Q
    ||||||||||| |||||||| || ||||||| |||||||||||||||||||    
T  41639701 acatcaatttggttgacaaccacgttgacaaccatatttttacaaagaaaa 41639751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 6440249 - 6440189
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    ||||||| ||| |||||||| | |||||||| |||||||||||||||||||  ||||||||    
T  6440249 acatcaacttggttgacaaccaaattgacaaccatatttttacaaagaaaagtatgtattg 6440189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 42786561 - 42786625
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||| ||| |||||||| | ||||||||||||  ||||||||||||||  ||||||||||||    
T  42786561 acatcaacttggttgacaaccaaattgacaatcatgattttacaaagaaaaatatgtattggcac 42786625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 5574423 - 5574364
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtatt 75  Q
    ||||||||||| |||||||| | |||||||  |||||||||||||||||||  |||||||    
T  5574423 acatcaatttggttgacaactatattgacacccatatttttacaaagaaaagtatgtatt 5574364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 25830149 - 25830213
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| || ||||| | || ||||| || ||||||||||||||||  ||||||||||||    
T  25830149 acatcaatttgtttaacaactaaatggacaaccacatttttacaaagaaaagtatgtattggcac 25830213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 33539573 - 33539509
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| |||||||| | || ||||| || |||||| |||||||||  ||||||||||||    
T  33539573 acatcaatttgcttgacaactaaatggacaaccacattttttcaaagaaaagtatgtattggcac 33539509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 21738521 - 21738585
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||  |||| |||||||    
T  21738521 acatcaatttggttgacaacgacattgacaatcatatttttacaaagaaaaatatgtgttggcac 21738585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 7084618 - 7084668
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaa 66  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  7084618 acatcaatttggttgacaaccacattgacaatcatatttttacaaagaaaa 7084668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 12071015 - 12070955
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    |||||||| ||||||||||| |||| ||||| ||| |||||||||||||||||||||||||    
T  12071015 acatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaatcatgtattg 12070955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 26290754 - 26290804
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaa 66  Q
    ||||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  26290754 acatcaatttggttgataactacattgacaatcatatttttacaaagaaaa 26290804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 14328549 - 14328489
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    |||||| | ||||||||||| |||| |||||| |||||||||| |||||||||||||||||    
T  14328549 acatcattgtgattgacaaccacatggacaattatatttttactaagaaaatcatgtattg 14328489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 4657469 - 4657406
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggca 79  Q
    ||||||||||| |||||||| | || |||||||| |||||||||||||||||  ||||||||||    
T  4657469 acatcaatttgcttgacaaccaaatggacaatcacatttttacaaagaaaattgtgtattggca 4657406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 19843652 - 19843588
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| |||||||  | ||||||||| ||||||||||||||||||  |||| |||||||    
T  19843652 acatcaatttggttgacaatcatattgacaattatatttttacaaagaaaagtatgtgttggcac 19843588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 40357990 - 40358049
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtatt 75  Q
    ||||||||||  |||||||  | || |||||||||||||||||||||||||| |||||||    
T  40357990 acatcaatttatttgacaatcaaatagacaatcatatttttacaaagaaaattatgtatt 40358049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 39309575 - 39309527
Alignment:
Q  18 atcaatttgattgacaacaacattgacaatcatatttttacaaagaaaa 66  Q
    ||||||||| |||||||  | ||||| ||||||||||||||||||||||    
T  39309575 atcaatttggttgacaatcatattgataatcatatttttacaaagaaaa 39309527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 45420303 - 45420239
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||  |||||||| | || ||||| || ||||||||||||||||  ||||||||||||    
T  45420303 acatcaatttatttgacaactaaatagacaaccacatttttacaaagaaaaatatgtattggcac 45420239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 34757814 - 34757876
Alignment:
Q  18 atcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    |||||||||||||||||  ||| |||||||||||||||||||||||||| ||||| |||||||    
T  34757814 atcaatttgattgacaatcacactgacaatcatatttttacaaagaaaaacatgtgttggcac 34757876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 34759088 - 34759150
Alignment:
Q  18 atcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    |||||||||||||||||  ||| |||||||||||||||||||||||||| ||||| |||||||    
T  34759088 atcaatttgattgacaatcacactgacaatcatatttttacaaagaaaaacatgtgttggcac 34759150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 15522522 - 15522462
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    |||||||| ||||||||||| |||| ||||| ||| |||||||||||||||||||||||||    
T  15522522 acatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaatcatgtattg 15522462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 47015173 - 47015109
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    |||||| |||| |||||||| ||||||||||||||||||||||||||||||  || |||||||||    
T  47015173 acatcagtttggttgacaaccacattgacaatcatatttttacaaagaaaagtatctattggcac 47015109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 31468894 - 31468952
Alignment:
Q  18 atcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    |||||| ||||||||||| | || ||||||||| |||||||||||||||||||||||||    
T  31468894 atcaatgtgattgacaaccatatagacaatcatctttttacaaagaaaatcatgtattg 31468952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 31574852 - 31574903
Alignment:
Q  25 tgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    ||||||||||| |||| ||||| ||| |||||||||||||||||||||||||    
T  31574852 tgattgacaaccacatggacaaccatctttttacaaagaaaatcatgtattg 31574903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 46665098 - 46665161
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggca 79  Q
    ||||||| |||||||||||| | |||||||| ||||| |||||||||||||  |||||||||||    
T  46665098 acatcaacttgattgacaaccaaattgacaaccatatatttacaaagaaaagtatgtattggca 46665161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 50980758 - 50980694
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| | |||||| | || |||||||| ||||||||||||||||  ||||||||||||    
T  50980758 acatcaatttgctggacaactaaatggacaatcacatttttacaaagaaaagtatgtattggcac 50980694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 16019644 - 16019594
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaa 66  Q
    |||||||||||||||||||  | |||||||| |||||||||| ||||||||    
T  16019644 acatcaatttgattgacaagcatattgacaaccatatttttataaagaaaa 16019594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 193700 - 193640
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    ||||| ||||| |||||||| | || ||||||||| |||||||||||||||  ||||||||    
T  193700 acatctatttgcttgacaaccaaatagacaatcatgtttttacaaagaaaaatatgtattg 193640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 1312 - 1248
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    |||||| |||| |||||||| ||||||||||||||||||||||||||||||  || |||||||||    
T  1312 acatcagtttggttgacaaccacattgacaatcatatttttacaaagaaaagtatctattggcac 1248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 35822878 - 35822942
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| |||||||| || ||||||| |||||||||||||||||||  ||||||||||||    
T  35822878 acatcaatttggttgacaaccacgttgacaaccatatttttacaaagaaaaatatgtattggcac 35822942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 41430055 - 41430115
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    |||||||| ||||||||||| |||| ||||| ||| ||||||||||||||||||| |||||    
T  41430055 acatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaatcatatattg 41430115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 42584970 - 42584910
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    |||||||| ||||||||||| |||| ||||| ||| ||||||||||||||||||| |||||    
T  42584970 acatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaatcatctattg 42584910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 44496706 - 44496770
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| |||||||  | || ||||| |||||||||||||||||||| ||||||||||||    
T  44496706 acatcaatttgtttgacaattaaatggacaaccatatttttacaaagaaaattatgtattggcac 44496770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 36352487 - 36352548
Alignment:
Q  16 acatcaatttgattgacaa-caacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    |||||||| |||||||||| | |||| ||||| ||| ||||||||||||||||||| |||||    
T  36352487 acatcaatgtgattgacaaactacatggacaaccatctttttacaaagaaaatcatatattg 36352548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 34507109 - 34507169
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    |||||||| ||||||||||| |||| |||||  || |||||| ||| ||||||||||||||    
T  34507109 acatcaatgtgattgacaaccacatggacaactatctttttataaaaaaaatcatgtattg 34507169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 48145668 - 48145628
Alignment:
Q  40 ttgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||| |||||||||||||||||||  ||||||||||||    
T  48145668 ttgacaaccatatttttacaaagaaaagtatgtattggcac 48145628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 30519528 - 30519587
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtatt 75  Q
    |||||||| ||||||||||| |||| ||||| ||| ||||||||||||||||||||||||    
T  30519528 acatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaatcatgtatt 30519587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 29359911 - 29359861
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaa 66  Q
    |||||||||||||||||||| |||||||||| |||||||||| ||||||||    
T  29359911 acatcaatttgattgacaaccacattgacaaccatatttttataaagaaaa 29359861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 49020309 - 49020373
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| |||||||| | |||||||| |||||||||||||||||||  || |||||||||    
T  49020309 acatcaatttggttgacaaccaaattgacaaccatatttttacaaagaaaaatatatattggcac 49020373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 12999726 - 12999790
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| |||||||| | || ||||| || ||||||||||||||||  ||||||||||||    
T  12999726 acatcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaaatatgtattggcac 12999790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 29877465 - 29877405
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    |||||||||| ||||||||  | || ||||| |||||||||||||||||||| ||||||||    
T  29877465 acatcaattttattgacaatcatatggacaaccatatttttacaaagaaaattatgtattg 29877405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 30973720 - 30973660
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    ||||||||||| |||||||| | || |||||||| ||||||||||||||||  ||||||||    
T  30973720 acatcaatttgcttgacaactaaatggacaatcacatttttacaaagaaaagtatgtattg 30973660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 49446697 - 49446747
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaa 66  Q
    ||||||||||| |||||||| | || |||||||| ||||||||||||||||    
T  49446697 acatcaatttgcttgacaactaaatggacaatcacatttttacaaagaaaa 49446747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 30745154 - 30745094
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    |||| ||||||||||||||| | || ||||| |||| | ||||||||||||| ||||||||    
T  30745154 acattaatttgattgacaaccatatagacaaccatactcttacaaagaaaattatgtattg 30745094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 30766605 - 30766545
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    |||| ||||||||||||||| | || ||||| |||| | ||||||||||||| ||||||||    
T  30766605 acattaatttgattgacaaccatatagacaaccatactcttacaaagaaaattatgtattg 30766545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 34817948 - 34818012
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||  |||||||  | |||||||| |||||||||||||||||||  |||| |||||||    
T  34817948 acatcaatttagttgacaatcatattgacaaccatatttttacaaagaaaaatatgtgttggcac 34818012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 16690665 - 16690603
Alignment:
Q  18 atcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||| |||||||| |||||||||| |||||||||||||||||||  |||| |||||||    
T  16690665 atcaatttggttgacaaccacattgacaaccatatttttacaaagaaaagtatgtgttggcac 16690603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 26687046 - 26686996
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaa 66  Q
    |||| ||||||||||||||| |||||||||| |||||||||||||||||||    
T  26687046 acattaatttgattgacaactacattgacaaccatatttttacaaagaaaa 26686996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 26956777 - 26956727
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaa 66  Q
    |||| ||||||||||||||| |||||||||| |||||||||||||||||||    
T  26956777 acattaatttgattgacaactacattgacaaccatatttttacaaagaaaa 26956727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 34940801 - 34940751
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaa 66  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||||||    
T  34940801 acatcaatttggttgacaaccacattgacaatcatatttttataaagaaaa 34940751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 9168071 - 9168134
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| |||||||| | ||||||||||||| ||||||||||||||  |||| |||||||    
T  9168071 acatcaatttggttgacaaccatattgacaatcata-ttttacaaagaaaagtatgtgttggcac 9168134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 14321858 - 14321918
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    |||||||||| ||||||||| | || ||||| |||| ||||||||||||||| ||||||||    
T  14321858 acatcaatttaattgacaaccatatggacaaccatacttttacaaagaaaattatgtattg 14321918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 38493793 - 38493729
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| |||||||| |||||||||  |||||||| ||||||||||  |||| |||||||    
T  38493793 acatcaatttggttgacaaccacattgacacccatattttaacaaagaaaagtatgtgttggcac 38493729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 6758693 - 6758754
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatca-tatttttacaaagaaaatcatgtattg 76  Q
    |||||||| ||||||||||| |||| ||||| || | ||||| |||||||||||||||||||    
T  6758693 acatcaatatgattgacaaccacatggacaaccatttttttttcaaagaaaatcatgtattg 6758754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 54099260 - 54099310
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaa 66  Q
    ||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  54099260 acatcaatttggttgacaattacattgacaatcatatttttacaaagaaaa 54099310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 1436984 - 1436920
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| || ||||| |||||||||| |||||||||||||||||||  |||| |||||||    
T  1436984 acatcaatttggtttacaaccacattgacaaccatatttttacaaagaaaagtatgtgttggcac 1436920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 36755956 - 36756004
Alignment:
Q  18 atcaatttgattgacaacaacattgacaatcatatttttacaaagaaaa 66  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||||    
T  36755956 atcaatttgattgacaatcacattgacaaccatatttttacaaagaaaa 36756004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 48944614 - 48944678
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| |||||||| | ||  ||||||||||||||||||||||||  ||||||||||||    
T  48944614 acatcaatttgcttgacaactaaatgaacaatcatatttttacaaagaaaaatatgtattggcac 48944678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 51699026 - 51698962
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| |||||||| |||||||||| |||||| ||||||||||||  |||| |||||||    
T  51699026 acatcaatttggttgacaaccacattgacaaccatattcttacaaagaaaagtatgtgttggcac 51698962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 29781068 - 29781001
Alignment:
Q  13 tggacatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||||||||||||||  | || |||||||||||||||| ||||||||   |||||||||||    
T  29781068 tggacatcaatttgattgacaatcatatggacaatcatatttttataaagaaaagtttgtattggcac 29781001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 26452628 - 26452686
Alignment:
Q  18 atcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    |||||| ||||||||||  | || ||||||||| |||||||||||||||||||||||||    
T  26452628 atcaatgtgattgacaattatatggacaatcatctttttacaaagaaaatcatgtattg 26452686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 43720546 - 43720496
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaa 66  Q
    |||| |||||| |||||||| ||||||||||||||||||||| ||||||||    
T  43720546 acattaatttggttgacaaccacattgacaatcatatttttataaagaaaa 43720496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 23868882 - 23868946
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||| ||||| |||||||| | || ||||||||||||||||||| |||||  ||||||||||||    
T  23868882 acatctatttgcttgacaaccaaatagacaatcatatttttacaaggaaaaaaatgtattggcac 23868946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 49761090 - 49761154
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| |||||||| | || ||||| || ||||||||||||||||  ||||||||||||    
T  49761090 acatcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaaatatgtattggcac 49761154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 52100428 - 52100369
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtatt 75  Q
    ||||||||||| |||||||  | || |||||||||||||||||||||||||  |||||||    
T  52100428 acatcaatttgcttgacaattaaatggacaatcatatttttacaaagaaaaatatgtatt 52100369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 658736 - 658769
Alignment:
Q  43 acaatcatatttttacaaagaaaatcatgtattg 76  Q
    ||||||||||||||||||||||||| ||||||||    
T  658736 acaatcatatttttacaaagaaaattatgtattg 658769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 52485640 - 52485576
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||| ||||| ||||||||   || ||||| |||||||||||||||||||  ||||||||||||    
T  52485640 acatctatttgtttgacaacctaatggacaaccatatttttacaaagaaaagtatgtattggcac 52485576  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 33651188 - 33651127
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattgg 77  Q
    ||||| ||||| |||||||  | || ||||| |||||||||||||||||||| |||||||||    
T  33651188 acatccatttgtttgacaatcaaatagacaaccatatttttacaaagaaaattatgtattgg 33651127  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 1376534 - 1376474
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    ||||||||||| |||||||| | || ||||| || ||||||||||||||||  ||||||||    
T  1376534 acatcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaaatatgtattg 1376474  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 1384282 - 1384222
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattg 76  Q
    ||||||||||| |||||||| | || ||||| || ||||||||||||||||  ||||||||    
T  1384282 acatcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaaatatgtattg 1384222  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 12665 - 12601
Alignment:
Q  16 acatcaatttgattgacaacaacattgacaatcatatttttacaaagaaaatcatgtattggcac 80  Q
    ||||||||||| |||||||| | || ||||| || |||||||| |||||||  ||||||||||||    
T  12665 acatcaatttgcttgacaactaaatggacaaccacatttttaccaagaaaagtatgtattggcac 12601  T

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