View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10161_high_19 (Length: 255)

Name: NF10161_high_19
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10161_high_19
NF10161_high_19
[»] chr2 (13 HSPs)
chr2 (1-239)||(32310522-32310760)
chr2 (1-226)||(32786512-32786737)
chr2 (1-239)||(32564060-32564298)
chr2 (1-234)||(32813723-32813956)
chr2 (1-239)||(28221970-28222208)
chr2 (1-226)||(32306405-32306630)
chr2 (1-239)||(28214076-28214314)
chr2 (1-118)||(32792895-32793012)
chr2 (1-76)||(32799563-32799638)
chr2 (4-133)||(28158816-28158945)
chr2 (22-237)||(28177370-28177590)
chr2 (186-237)||(28183155-28183206)
chr2 (180-239)||(32317489-32317548)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 32310760 - 32310522
Alignment:
Q  1 aggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgag 100  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32310760 aggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgag 32310661  T
Q  101 ccatcagcagttgatcagcaaacaataaccctcttcctctcaacaaactatgatagcagtgagtgtcgaaagatgctccagatggcactgcagatgacaa 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  32310660 ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa 32310561  T
Q  201 tgcttgcatgtatgacatccctttgttattagagtgatg 239  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  32310560 tgcttgcatgtatgacatccctttgtcattagagtgatg 32310522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 32786512 - 32786737
Alignment:
Q  1 aggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgag 100  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32786512 aggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgag 32786611  T
Q  101 ccatcagcagttgatcagcaaacaataaccctcttcctctcaacaaactatgatagcagtgagtgtcgaaagatgctccagatggcactgcagatgacaa 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  32786612 ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa 32786711  T
Q  201 tgcttgcatgtatgacatccctttgt 226  Q
    ||||||||||||||||||||||||||    
T  32786712 tgcttgcatgtatgacatccctttgt 32786737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 32564060 - 32564298
Alignment:
Q  1 aggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgag 100  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32564060 aggttagacaatttcaacataacccttgcgaaatccatccgaaaggtagatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgag 32564159  T
Q  101 ccatcagcagttgatcagcaaacaataaccctcttcctctcaacaaactatgatagcagtgagtgtcgaaagatgctccagatggcactgcagatgacaa 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||||| ||||||||||||||    
T  32564160 ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaaaatgctccagatggaactgcagatgacaa 32564259  T
Q  201 tgcttgcatgtatgacatccctttgttattagagtgatg 239  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  32564260 tgcttgcatgtatgacatccctttgtcattagagtgatg 32564298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 32813723 - 32813956
Alignment:
Q  1 aggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgag 100  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32813723 aggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcaaaaaccaatctggcagtcttctcttgag 32813822  T
Q  101 ccatcagcagttgatcagcaaacaataaccctcttcctctcaacaaactatgatagcagtgagtgtcgaaagatgctccagatggcactgcagatgacaa 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| ||||||||||||||    
T  32813823 ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggtactgcagatgacaa 32813922  T
Q  201 tgcttgcatgtatgacatccctttgttattagag 234  Q
    |||||||||||||||||||||||||| |||||||    
T  32813923 tgcttgcatgtatgacatccctttgtcattagag 32813956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28222208 - 28221970
Alignment:
Q  1 aggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgag 100  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||    
T  28222208 aggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcaaaaaccaatatggcagtcttctcttaag 28222109  T
Q  101 ccatcagcagttgatcagcaaacaataaccctcttcctctcaacaaactatgatagcagtgagtgtcgaaagatgctccagatggcactgcagatgacaa 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |||||||||||||||    
T  28222108 ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaa 28222009  T
Q  201 tgcttgcatgtatgacatccctttgttattagagtgatg 239  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  28222008 tgcttgcttgtatgacatccctttgttattagagtgatg 28221970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 32306630 - 32306405
Alignment:
Q  1 aggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgag 100  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32306630 aggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgag 32306531  T
Q  101 ccatcagcagttgatcagcaaacaataaccctcttcctctcaacaaactatgatagcagtgagtgtcgaaagatgctccagatggcactgcagatgacaa 200  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  32306530 ccatcagctgttgatcagaaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaatatgctccagatggcactgcagatgacaa 32306431  T
Q  201 tgcttgcatgtatgacatccctttgt 226  Q
    ||||||||||||||||||||||||||    
T  32306430 tgcttgcatgtatgacatccctttgt 32306405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 28214076 - 28214314
Alignment:
Q  1 aggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgag 100  Q
    |||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||    
T  28214076 aggttagacaatttcatcataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatttggctgtcttctcttcag 28214175  T
Q  101 ccatcagcagttgatcagcaaacaataaccctcttcctctcaacaaactatgatagcagtgagtgtcgaaagatgctccagatggcactgcagatgacaa 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| || |||||| |||||||||| |||||||||||||||| |||||||||||||||    
T  28214176 ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaatctctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaa 28214275  T
Q  201 tgcttgcatgtatgacatccctttgttattagagtgatg 239  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  28214276 tgcttgcttgtatgacatccctttgttattagagtgatg 28214314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 32792895 - 32793012
Alignment:
Q  1 aggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgag 100  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32792895 aggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgag 32792994  T
Q  101 ccatcagcagttgatcag 118  Q
    |||||||| |||||||||    
T  32792995 ccatcagctgttgatcag 32793012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 32799563 - 32799638
Alignment:
Q  1 aggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaa 76  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32799563 aggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaa 32799638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 28158945 - 28158816
Alignment:
Q  4 ttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagcca 103  Q
    |||||||||||| |||  |||||||| ||||||||| ||||||||||||||||||| ||||||| |||||||| |||||| ||||| ||||||  |||||    
T  28158945 ttagacaatttcaacaccacccttgccaaatccatccgaaaggttgatccgtcatcggaagcattagcagaaatcaatctagcagtgttctctccagcca 28158846  T
Q  104 tcagcagttgatcagcaaacaataaccctc 133  Q
    | ||| |||||| ||| |||| || |||||    
T  28158845 tgagctgttgattagcgaacagtagccctc 28158816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 28177590 - 28177370
Alignment:
Q  22 acccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagcagttgatcagcaa 121  Q
    |||||||| ||||||||| ||||||||||||||||||| ||||||| |||||||| ||| || ||| |  |||||  |||||||||| |||||| ||| |    
T  28177590 acccttgcaaaatccatccgaaaggttgatccgtcatcggaagcattagcagaaatcaacctagcactgctctctccagccatcagctgttgattagcga 28177491  T
Q  122 acaata-----accctcttcctctcaacaaactatgatagcagtgagtgtcgaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgac 216  Q
    ||| ||      |||||||||||| || |||||  |||| ||   |||||| || ||||||  ||||| ||||||||||||||| |||||||||  ||||    
T  28177490 acagtagccctcccctcttcctcttaataaactcggatatcatcaagtgtcaaatgatgcttaagatgacactgcagatgacaacgcttgcatgcctgac 28177391  T
Q  217 atccctttgttattagagtga 237  Q
    ||| ||||  | |||||||||    
T  28177390 atcacttttatgttagagtga 28177370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 28183206 - 28183155
Alignment:
Q  186 cactgcagatgacaatgcttgcatgtatgacatccctttgttattagagtga 237  Q
    ||||||||||||||| |||| |||||||||||||||||| || |||||||||    
T  28183206 cactgcagatgacaacgcttccatgtatgacatcccttttttgttagagtga 28183155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 32317548 - 32317489
Alignment:
Q  180 agatggcactgcagatgacaatgcttgcatgtatgacatccctttgttattagagtgatg 239  Q
    ||||||||||||| ||||||| ||||||  |||||| |||||||| ||||||||||||||    
T  32317548 agatggcactgcatatgacaaagcttgcgcgtatgatatccctttattattagagtgatg 32317489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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