View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10161_high_2 (Length: 758)
Name: NF10161_high_2
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 150 - 583
Target Start/End: Original strand, 52140290 - 52140714
Alignment:
| Q |
150 |
acatcttgatctttcatagcaacacgacatgtttggtcacggttcataggtcgtgagcattgatcacacgatgtaataccataagtgcatccatttggac |
249 |
Q |
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| T |
52140290 |
acattttgatctttcatagcaacatgacgtgtttcgtcccggttcataggttgcgagcattgatcacacgatgtaataccataagtgcatccatttggac |
52140389 |
T |
|
| Q |
250 |
acatgtaaagcgaggttcctagattgtgatcatcatttggaatcgttggatcaaagagaacataattctggttgaggttttggagagtagtactagtatg |
349 |
Q |
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| T |
52140390 |
acatgtaaaccgagattcctagactgtgatcatcatttggaattgttggatcaaagagaacataattctggttgagattttggacagtagtactagtatg |
52140489 |
T |
|
| Q |
350 |
atatagatttcctaagctgccaaacaaatgcttgtcgttgtttctcatgagccttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtct |
449 |
Q |
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| T |
52140490 |
atatagatttcctaagctgccaaacaaatgcatgtcattgttgctcatgagccttacaacagtaccaaaagacaagcgaaacatgtttaagagagagttt |
52140589 |
T |
|
| Q |
450 |
atggcggctttggatgcttcagcgaatagaactttgttttgctttttgtcaaacagaagcttaagggtcactttggttgaagaagatgaagaagaagcca |
549 |
Q |
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| T |
52140590 |
atggcagctttggatgcttcagcgaatagaactttgttttgctttttgtcaaccagaagcttaagggttactttggt---------tgaagaagaagcca |
52140680 |
T |
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| Q |
550 |
tattgaaagataatgcattaacagagaggctagt |
583 |
Q |
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| T |
52140681 |
tattgaaagataatgcattaacagagaggctagt |
52140714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 580 - 717
Target Start/End: Original strand, 52140746 - 52140883
Alignment:
| Q |
580 |
tagtggaagatgtatagaaaattgtaaaagtaagtttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgct |
679 |
Q |
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| T |
52140746 |
tagtggaagatgtatagaaaattgtaaaagtaagcttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgct |
52140845 |
T |
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| Q |
680 |
aatttaattcgatgtatttatgtacaaacagttgccac |
717 |
Q |
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| T |
52140846 |
aatttaattcgatgtatttatgtacaaacagttgccac |
52140883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 304 - 535
Target Start/End: Original strand, 52130840 - 52131077
Alignment:
| Q |
304 |
agagaacataattctggttgaggttttggagagtagtactagtatgatatagatttcctaagctgccaaacaaatgcttgt---cgttgtttctc---at |
397 |
Q |
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| T |
52130840 |
agagaacataattctggttgaggttttggagagtactactagtgtgatgcagattgcctaagctacccgccaaatgcatgttaacgttattgctacttat |
52130939 |
T |
|
| Q |
398 |
gagccttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcggctttggatgcttcagcgaatagaactttgttttgctttttg |
497 |
Q |
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| T |
52130940 |
gagccttaaaactgtgccaaaagacaagtgaaacatgtttaagagagagtctacggcagcttttgatgcttctgcaaacagaactttgttttgctttgtg |
52131039 |
T |
|
| Q |
498 |
tcaaacagaagcttaagggtcactttggttgaagaaga |
535 |
Q |
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|||| | ||||||||||||||| |||||| |||||||| |
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| T |
52131040 |
tcaaccggaagcttaagggtcattttggtggaagaaga |
52131077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 52130572 - 52130680
Alignment:
| Q |
60 |
acttgtttgaaatcgaacttgttaagtaacgtaacaattgaaattggtgagaagggatgaataaccaaatcatccatcaacatgaaagttacatcttgat |
159 |
Q |
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| T |
52130572 |
acttgtttgatattgaacttgttgattaacgtaataactgaaattgctaagatgggctgaatcactaaatcatccatcaacatgaaaattacattttgat |
52130671 |
T |
|
| Q |
160 |
ctttcatag |
168 |
Q |
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||||||||| |
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| T |
52130672 |
ctttcatag |
52130680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 195 - 583
Target Start/End: Complemental strand, 17525380 - 17525002
Alignment:
| Q |
195 |
ataggtcgtgagcattgatcacacgatgtaataccataagtgcatccatttggacacatgtaaagcgaggttcctagattgtgatcatcatttggaatcg |
294 |
Q |
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|||||| | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | |
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| T |
17525380 |
ataggttgcgagcattgatc-cacgatgtaataccttaagtgcatccatttggacacatgtaaaacgaggttcctaggctgtgatcatcatttggaattg |
17525282 |
T |
|
| Q |
295 |
ttggatcaaagagaacataattctggttgaggttttggagagtagtactagtatgatatagatttcctaagctgccaaacaaatgcttgtcgttgtttct |
394 |
Q |
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||||||| |||||||| ||||| |||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| || |
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| T |
17525281 |
ttggatcgaagagaacgtaattttggttgagattttggacagtagtactagtatgatacagatttcctaagctgccaaacaaatgcatgtcgttgtagct |
17525182 |
T |
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| Q |
395 |
catgagccttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcggctttggatgcttcagcgaatagaactttgttttgcttt |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| || || | |||||||||||||||| |
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| T |
17525181 |
catgagccttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcagcttgtgatgattcggcaaacataactttgttttgcttt |
17525082 |
T |
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| Q |
495 |
ttgtcaaacagaagcttaagggtcactttggttgaagaagatgaagaagaagccatattgaaagataatgcattaacagagaggctagt |
583 |
Q |
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| T |
17525081 |
gtgtcaaccagaagcctaagggtcactttggttgaag---------aagaagccatattgaaagataatgcattaacagagaggctagt |
17525002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 592 - 694
Target Start/End: Complemental strand, 17524955 - 17524854
Alignment:
| Q |
592 |
tatagaaaattgtaaaagtaagtttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgctaatttaattcga |
691 |
Q |
| |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| |
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| T |
17524955 |
tatagaaaattgtaaaagtaactt-ggtatttattacttagagattggaaattggaatgtatgaagtcctactggccacggtattgctaatttaattcga |
17524857 |
T |
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| Q |
692 |
tgt |
694 |
Q |
| |
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||| |
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| T |
17524856 |
tgt |
17524854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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